Oshlack

Analysis code and output for the Combes kidney organoid scRNA-seq paper

Method for detecting STR expansions from short-read sequencing data

Table of software for the analysis of single-cell RNA-seq data.

Gene Fusion Visualiser

Simple simulation of single-cell RNA sequencing data

Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.

Oshlack Lab website

Software for clustering de novo assembled transcripts and counting overlapping reads

Combine reference and assembled transcriptomes for RNA-Seq analysis

A review of tools for analysing single-cell RNA-seq data

Paper describing the clustering tree visualisation

Building SuperTranscripts: A linear representation of transcriptome data

Data and analysis for the Splatter paper

Clinical pipeline for detecting gene fusions in RNAseq data utilising JAFFA.

Basic bpipe pipeline stages and pipelines for RNA/DNAseq analysis.

This repository contains code and scripts used to generate and analyse data for the superTranscript/Lace paper.

This repository contains code from the paper Farlie et al.

JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

A cross-package Bioconductor workflow for analysing methylation array data

Analysis scripts for eight different scRNASeq datasets that differ in terms of protocol, species and cell type

An Acute Lymphoblasitc Leukemia B-Cell classifier