Simple simulation of single-cell RNA sequencing data
R 168 51
Building SuperTranscripts: A linear representation of transcriptome data
Python 63 19
Software for clustering de novo assembled transcripts and counting overlapping reads
C++ 56 18
Method for detecting STR expansions from short-read sequencing data
Python 56 15
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
C++ 51 18
Gene Fusion Visualiser
Python 42 12
Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
Oshlack Lab website
Desktop app incorporating https://github.com/oshlack/toblerone
R package for specialised analysis of single cell data
ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.
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