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Oshlack

Popular repositories

  1. splatter Public

    Simple simulation of single-cell RNA sequencing data

    R 168 51

  2. Lace Public

    Building SuperTranscripts: A linear representation of transcriptome data

    Python 63 19

  3. Corset Public

    Software for clustering de novo assembled transcripts and counting overlapping reads

    C++ 56 18

  4. STRetch Public

    Method for detecting STR expansions from short-read sequencing data

    Python 56 15

  5. JAFFA Public

    JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

    C++ 51 18

  6. Clinker Public

    Gene Fusion Visualiser

    Python 42 12

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