Welcome to the All Sorts Readme!
AllSorts is a B-Cell Acute Lymphoblastic Leukemia Classifier, aiming to classify ALL into its various sub-types using RNA-Seq data to observe gene expression profiles.
The tool is an R package which includes vignettes for you to peruse at your own pace which will explain how to use the classifier.
#Installation To install an R package from GitHub, first you will need to install the devtools packge. So open an R/RStudio session:
Load the devtools package.
Then simply use the install_github("author/package") function of devtools. So for AllSorts that would simply be:
Alternatively if one does not have the required BioConductor packages such as edgeR/limma one may wish to install using BiocLite. Note devtools are still required in this case.
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("Oshlack/AllSorts")
To read the manual please read the R vignette after installing the pacakge for the most up-to-date manual and tutorial, alternatively read the package wiki.