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This repository contains code and scripts used to generate and analyse data for the superTranscript/Lace paper.
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Gviz_figs
chicken_superTranscriptome
differential_isoform_usage
human_superTranscriptome
mouse_superTranscriptome
variant_calling
README.md

README.md

superTranscript_paper_code

The repository contains code and scripts used to generate and analyse data for the superTranscript/Lace paper.

  • Scripts used in the chicken superTranscript analysis
  • R scripts for Gviz
  • human superTranscriptome, its annotation and the scripts used to create them
  • mouse superTranscriptome, its annotation and the scripts used to create them
  • bash and R scripts for the differential isoform usgae comparison
  • code used for variant calling on superTranscripts
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