Started by user Long Vu
Replayed #40
 > git rev-parse --is-inside-work-tree # timeout=10
Setting origin to https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests.git
 > git config remote.origin.url https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests.git # timeout=10
Fetching origin...
Fetching upstream changes from origin
 > git --version # timeout=10
 > git config --get remote.origin.url # timeout=10
 > git fetch --tags --progress -- origin +refs/heads/*:refs/remotes/origin/* # timeout=10
Seen branch in repository origin/current-production-version
Seen branch in repository origin/custom_climate_portraits
Seen branch in repository origin/devel-new-extensions
Seen branch in repository origin/extended_tests
Seen branch in repository origin/lvu-test
Seen branch in repository origin/master
Seen branch in repository origin/new-docker-build
Seen branch in repository origin/preview-docker-build
Seen branch in repository origin/twitcher_perf_test_notebook
Seen 9 remote branches
Obtained Jenkinsfile from c0a31579bfbb4720159d48229d7d0d7d0608f3a1
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Running on linux1 in /home/jenkins/agent/workspace/_workflow-tests_new-docker-build
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
No credentials specified
Fetching changes from the remote Git repository
Fetching without tags
Checking out Revision 9f1863c34283c6b8f3c45a5bd8da6573468400b8 (new-docker-build)
Commit message: "release: update to use image pavics/workflow-tests:220502"
 > git rev-parse --is-inside-work-tree # timeout=10
 > git config remote.origin.url https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests.git # timeout=10
Fetching upstream changes from https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests.git
 > git --version # timeout=10
 > git fetch --no-tags --progress -- https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 9f1863c34283c6b8f3c45a5bd8da6573468400b8 # timeout=10
 > git rev-list --no-walk 9f1863c34283c6b8f3c45a5bd8da6573468400b8 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] isUnix
[Pipeline] sh
+ docker inspect -f . pavics/workflow-tests:220502
.
[Pipeline] withDockerContainer
linux1 seems to be running inside container 9ebab1c18330538cb140f614883c471f5616b5e1f235b20c2799ba96559c37b9
$ docker run -t -d -u 1000:1000 -w /home/jenkins/agent/workspace/_workflow-tests_new-docker-build --volumes-from 9ebab1c18330538cb140f614883c471f5616b5e1f235b20c2799ba96559c37b9 -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** -e ******** pavics/workflow-tests:220502 cat
$ docker top 27a9a6daadde82a6ed366550d588673f415ab09d09ed71aad9cf106dae7dd054 -eo pid,comm
[Pipeline] {
[Pipeline] ansiColor
[Pipeline] {
[Pipeline] timestamps
[Pipeline] {
[Pipeline] timeout
[2022-05-04T19:11:55.419Z] Timeout set to expire in 1 hr 0 min
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Run tests)
[Pipeline] script
[Pipeline] {
[Pipeline] withCredentials
[2022-05-04T19:11:55.507Z] Masking supported pattern matches of $ESGF_AUTH_USERNAME or $ESGF_AUTH_PASSWORD or $ESGF_AUTH_TOKEN or $COMPUTE_TOKEN
[Pipeline] {
[Pipeline] sh
[2022-05-04T19:11:55.801Z] + VERIFY_SSL=true SAVE_RESULTING_NOTEBOOK=false ./testall
[2022-05-04T19:11:55.801Z] TEST_PAVICS_SDI_REPO has been set to 'true'
[2022-05-04T19:11:55.801Z] PAVICS_SDI_BRANCH has been set to 'master'
[2022-05-04T19:11:55.801Z] PAVICS_SDI_REPO has been set to 'Ouranosinc/pavics-sdi'
[2022-05-04T19:11:55.801Z] TEST_FINCH_REPO has been set to 'true'
[2022-05-04T19:11:55.801Z] FINCH_BRANCH has been set to 'master'
[2022-05-04T19:11:55.801Z] FINCH_REPO has been set to 'bird-house/finch'
[2022-05-04T19:11:55.801Z] TEST_PAVICS_LANDING_REPO has been set to 'true'
[2022-05-04T19:11:55.801Z] PAVICS_LANDING_BRANCH has been set to 'master'
[2022-05-04T19:11:55.801Z] PAVICS_LANDING_REPO has been set to 'Ouranosinc/PAVICS-landing'
[2022-05-04T19:11:55.801Z] TEST_RAVEN_REPO has been set to 'false'
[2022-05-04T19:11:55.801Z] RAVEN_BRANCH has been set to 'master'
[2022-05-04T19:11:55.801Z] RAVEN_REPO has been set to 'Ouranosinc/raven'
[2022-05-04T19:11:55.801Z] TEST_ESGF_COMPUTE_API_REPO has been set to 'false'
[2022-05-04T19:11:55.801Z] ESGF_COMPUTE_API_BRANCH has been set to 'devel'
[2022-05-04T19:11:55.801Z] ESGF_COMPUTE_API_REPO has been set to 'ESGF/esgf-compute-api'
[2022-05-04T19:11:55.801Z] TEST_LOCAL_NOTEBOOKS has been set to 'true'
[2022-05-04T19:11:55.801Z] + git clean -fdx
[2022-05-04T19:11:56.066Z] Removing .pytest_cache/
[2022-05-04T19:11:56.066Z] Removing PAVICS-landing-master/
[2022-05-04T19:11:56.066Z] Removing __pycache__/
[2022-05-04T19:11:56.066Z] Removing buildout/
[2022-05-04T19:11:56.066Z] Removing esgf-compute-api-devel/
[2022-05-04T19:11:56.066Z] Removing finch-master/
[2022-05-04T19:11:56.066Z] Removing pavics-sdi-master/
[2022-05-04T19:11:56.066Z] Removing raven-master/
[2022-05-04T19:11:56.066Z] + ./downloadrepos
[2022-05-04T19:11:56.066Z] TEST_PAVICS_SDI_REPO has been set to 'true'
[2022-05-04T19:11:56.066Z] PAVICS_SDI_BRANCH has been set to 'master'
[2022-05-04T19:11:56.066Z] PAVICS_SDI_REPO has been set to 'Ouranosinc/pavics-sdi'
[2022-05-04T19:11:56.066Z] TEST_FINCH_REPO has been set to 'true'
[2022-05-04T19:11:56.066Z] FINCH_BRANCH has been set to 'master'
[2022-05-04T19:11:56.066Z] FINCH_REPO has been set to 'bird-house/finch'
[2022-05-04T19:11:56.066Z] TEST_PAVICS_LANDING_REPO has been set to 'true'
[2022-05-04T19:11:56.066Z] PAVICS_LANDING_BRANCH has been set to 'master'
[2022-05-04T19:11:56.066Z] PAVICS_LANDING_REPO has been set to 'Ouranosinc/PAVICS-landing'
[2022-05-04T19:11:56.066Z] TEST_RAVEN_REPO has been set to 'false'
[2022-05-04T19:11:56.066Z] RAVEN_BRANCH has been set to 'master'
[2022-05-04T19:11:56.066Z] RAVEN_REPO has been set to 'Ouranosinc/raven'
[2022-05-04T19:11:56.066Z] TEST_ESGF_COMPUTE_API_REPO has been set to 'false'
[2022-05-04T19:11:56.066Z] ESGF_COMPUTE_API_BRANCH has been set to 'devel'
[2022-05-04T19:11:56.066Z] ESGF_COMPUTE_API_REPO has been set to 'ESGF/esgf-compute-api'
[2022-05-04T19:11:56.066Z] TEST_LOCAL_NOTEBOOKS has been set to 'true'
[2022-05-04T19:11:56.066Z] + rm -rf pavics-sdi-*
[2022-05-04T19:11:56.066Z] + ls
[2022-05-04T19:11:56.066Z] + grep pavics-sdi
[2022-05-04T19:11:56.066Z] + downloadrepos https://github.com/Ouranosinc/pavics-sdi master
[2022-05-04T19:11:56.066Z] + github_repo=https://github.com/Ouranosinc/pavics-sdi
[2022-05-04T19:11:56.066Z] + shift
[2022-05-04T19:11:56.066Z] + branch=master
[2022-05-04T19:11:56.066Z] + shift
[2022-05-04T19:11:56.066Z] + wget --quiet --output-document - https://github.com/Ouranosinc/pavics-sdi/archive/master.tar.gz
[2022-05-04T19:11:56.066Z] + tar xz
[2022-05-04T19:12:01.329Z] + + ls
[2022-05-04T19:12:01.329Z] grep pavics-sdi
[2022-05-04T19:12:01.329Z] pavics-sdi-master
[2022-05-04T19:12:01.329Z] + set +x
[2022-05-04T19:12:01.329Z] + rm -rf finch-*
[2022-05-04T19:12:01.329Z] + ls
[2022-05-04T19:12:01.329Z] + grep finch
[2022-05-04T19:12:01.329Z] + downloadrepos https://github.com/bird-house/finch master
[2022-05-04T19:12:01.329Z] + github_repo=https://github.com/bird-house/finch
[2022-05-04T19:12:01.329Z] + shift
[2022-05-04T19:12:01.329Z] + branch=master
[2022-05-04T19:12:01.329Z] + shift
[2022-05-04T19:12:01.329Z] + wget --quiet --output-document - https://github.com/bird-house/finch/archive/master.tar.gz
[2022-05-04T19:12:01.329Z] + tar xz
[2022-05-04T19:12:01.586Z] + ls
[2022-05-04T19:12:01.586Z] + grep finch
[2022-05-04T19:12:01.586Z] finch-master
[2022-05-04T19:12:01.586Z] + set +x
[2022-05-04T19:12:01.586Z] + rm -rf PAVICS-landing-*
[2022-05-04T19:12:01.586Z] + ls
[2022-05-04T19:12:01.586Z] + grep PAVICS-landing
[2022-05-04T19:12:01.586Z] + downloadrepos https://github.com/Ouranosinc/PAVICS-landing master
[2022-05-04T19:12:01.586Z] + github_repo=https://github.com/Ouranosinc/PAVICS-landing
[2022-05-04T19:12:01.586Z] + shift
[2022-05-04T19:12:01.586Z] + branch=master
[2022-05-04T19:12:01.586Z] + shift
[2022-05-04T19:12:01.586Z] + wget --quiet --output-document - https://github.com/Ouranosinc/PAVICS-landing/archive/master.tar.gz
[2022-05-04T19:12:01.586Z] + tar xz
[2022-05-04T19:12:11.605Z] + ls
[2022-05-04T19:12:11.605Z] + grep PAVICS-landing
[2022-05-04T19:12:11.605Z] PAVICS-landing-master
[2022-05-04T19:12:11.605Z] + set +x
[2022-05-04T19:12:11.605Z] + rm -rf raven-*
[2022-05-04T19:12:11.605Z] + ls
[2022-05-04T19:12:11.605Z] + grep raven
[2022-05-04T19:12:11.605Z] + downloadrepos https://github.com/Ouranosinc/raven master
[2022-05-04T19:12:11.605Z] + github_repo=https://github.com/Ouranosinc/raven
[2022-05-04T19:12:11.605Z] + shift
[2022-05-04T19:12:11.605Z] + branch=master
[2022-05-04T19:12:11.605Z] + shift
[2022-05-04T19:12:11.605Z] + wget --quiet --output-document - https://github.com/Ouranosinc/raven/archive/master.tar.gz
[2022-05-04T19:12:11.605Z] + tar xz
[2022-05-04T19:12:14.137Z] + ls
[2022-05-04T19:12:14.137Z] + grep raven
[2022-05-04T19:12:14.137Z] raven-master
[2022-05-04T19:12:14.137Z] + set +x
[2022-05-04T19:12:14.137Z] + rm -rf esgf-compute-api-*
[2022-05-04T19:12:14.137Z] + grep esgf-compute-api
[2022-05-04T19:12:14.137Z] + ls
[2022-05-04T19:12:14.137Z] + downloadrepos https://github.com/ESGF/esgf-compute-api devel
[2022-05-04T19:12:14.137Z] + github_repo=https://github.com/ESGF/esgf-compute-api
[2022-05-04T19:12:14.137Z] + shift
[2022-05-04T19:12:14.137Z] + branch=devel
[2022-05-04T19:12:14.137Z] + shift
[2022-05-04T19:12:14.137Z] + tar xz
[2022-05-04T19:12:14.137Z] + wget --quiet --output-document - https://github.com/ESGF/esgf-compute-api/archive/devel.tar.gz
[2022-05-04T19:12:15.079Z] + ls
[2022-05-04T19:12:15.079Z] + grep esgf-compute-api
[2022-05-04T19:12:15.079Z] esgf-compute-api-devel
[2022-05-04T19:12:15.079Z] + set +x
[2022-05-04T19:12:15.079Z] + echo master
[2022-05-04T19:12:15.079Z] + sed s@/@-@g
[2022-05-04T19:12:15.079Z] + PAVICS_SDI_BRANCH=master
[2022-05-04T19:12:15.079Z] + echo Ouranosinc/pavics-sdi
[2022-05-04T19:12:15.079Z] + sed s@^.*/@@g
[2022-05-04T19:12:15.079Z] + PAVICS_SDI_REPO_NAME=pavics-sdi
[2022-05-04T19:12:15.079Z] + echo master
[2022-05-04T19:12:15.079Z] + sed s@/@-@g
[2022-05-04T19:12:15.079Z] + FINCH_BRANCH=master
[2022-05-04T19:12:15.079Z] + echo bird-house/finch
[2022-05-04T19:12:15.079Z] + sed s@^.*/@@g
[2022-05-04T19:12:15.079Z] + FINCH_REPO_NAME=finch
[2022-05-04T19:12:15.079Z] + echo master
[2022-05-04T19:12:15.079Z] + sed s@/@-@g
[2022-05-04T19:12:15.079Z] + PAVICS_LANDING_BRANCH=master
[2022-05-04T19:12:15.079Z] + echo Ouranosinc/PAVICS-landing
[2022-05-04T19:12:15.079Z] + sed s@^.*/@@g
[2022-05-04T19:12:15.079Z] + PAVICS_LANDING_REPO_NAME=PAVICS-landing
[2022-05-04T19:12:15.079Z] + echo master
[2022-05-04T19:12:15.079Z] + sed s@/@-@g
[2022-05-04T19:12:15.079Z] + RAVEN_BRANCH=master
[2022-05-04T19:12:15.079Z] + sed s@^.*/@@g
[2022-05-04T19:12:15.079Z] + echo Ouranosinc/raven
[2022-05-04T19:12:15.079Z] + RAVEN_REPO_NAME=raven
[2022-05-04T19:12:15.079Z] + echo devel
[2022-05-04T19:12:15.079Z] + sed s@/@-@g
[2022-05-04T19:12:15.079Z] + ESGF_COMPUTE_API_BRANCH=devel
[2022-05-04T19:12:15.079Z] + echo ESGF/esgf-compute-api
[2022-05-04T19:12:15.079Z] + sed s@^.*/@@g
[2022-05-04T19:12:15.079Z] + ESGF_COMPUTE_API_REPO_NAME=esgf-compute-api
[2022-05-04T19:12:15.079Z] + echo pavics-sdi-master
[2022-05-04T19:12:15.079Z] + sed s@[^a-zA-Z0-9_\-\.]@-@g
[2022-05-04T19:12:15.079Z] + PAVICS_SDI_DIR=pavics-sdi-master
[2022-05-04T19:12:15.079Z] + echo finch-master
[2022-05-04T19:12:15.079Z] + sed s@[^a-zA-Z0-9_\-\.]@-@g
[2022-05-04T19:12:15.079Z] + FINCH_DIR=finch-master
[2022-05-04T19:12:15.079Z] + echo PAVICS-landing-master
[2022-05-04T19:12:15.079Z] + sed s@[^a-zA-Z0-9_\-\.]@-@g
[2022-05-04T19:12:15.079Z] + PAVICS_LANDING_DIR=PAVICS-landing-master
[2022-05-04T19:12:15.079Z] + echo raven-master
[2022-05-04T19:12:15.079Z] + sed s@[^a-zA-Z0-9_\-\.]@-@g
[2022-05-04T19:12:15.079Z] + RAVEN_DIR=raven-master
[2022-05-04T19:12:15.079Z] + echo esgf-compute-api-devel
[2022-05-04T19:12:15.079Z] + sed s@[^a-zA-Z0-9_\-\.]@-@g
[2022-05-04T19:12:15.079Z] + ESGF_COMPUTE_API_DIR=esgf-compute-api-devel
[2022-05-04T19:12:15.079Z] + echo true
[2022-05-04T19:12:15.079Z] + tr [:upper:] [:lower:]
[2022-05-04T19:12:15.079Z] + VERIFY_SSL=true
[2022-05-04T19:12:15.079Z] + [ xtrue = xfalse ]
[2022-05-04T19:12:15.079Z] + rm -v finch-master/setup.cfg
[2022-05-04T19:12:15.079Z] removed 'finch-master/setup.cfg'
[2022-05-04T19:12:15.079Z] + rm -v raven-master/setup.cfg
[2022-05-04T19:12:15.079Z] removed 'raven-master/setup.cfg'
[2022-05-04T19:12:15.079Z] + rm -v esgf-compute-api-devel/setup.cfg
[2022-05-04T19:12:15.079Z] rm: cannot remove 'esgf-compute-api-devel/setup.cfg': No such file or directory
[2022-05-04T19:12:15.079Z] + rm -v esgf-compute-api-devel/tox.ini
[2022-05-04T19:12:15.079Z] rm: cannot remove 'esgf-compute-api-devel/tox.ini': No such file or directory
[2022-05-04T19:12:15.079Z] + echo false
[2022-05-04T19:12:15.079Z] + tr [:upper:] [:lower:]
[2022-05-04T19:12:15.079Z] + TEST_MAGPIE_AUTH=false
[2022-05-04T19:12:15.079Z] + echo true
[2022-05-04T19:12:15.079Z] + tr [:upper:] [:lower:]
[2022-05-04T19:12:15.079Z] + TEST_PAVICS_SDI_REPO=true
[2022-05-04T19:12:15.079Z] + echo false
[2022-05-04T19:12:15.079Z] + tr [:upper:] [:lower:]
[2022-05-04T19:12:15.079Z] + TEST_PAVICS_SDI_WEAVER=false
[2022-05-04T19:12:15.079Z] + echo true
[2022-05-04T19:12:15.079Z] + tr [:upper:] [:lower:]
[2022-05-04T19:12:15.079Z] + TEST_FINCH_REPO=true
[2022-05-04T19:12:15.079Z] + echo true
[2022-05-04T19:12:15.079Z] + tr [:upper:] [:lower:]
[2022-05-04T19:12:15.079Z] + TEST_PAVICS_LANDING_REPO=true
[2022-05-04T19:12:15.079Z] + echo false
[2022-05-04T19:12:15.079Z] + tr [:upper:] [:lower:]
[2022-05-04T19:12:15.079Z] + TEST_RAVEN_REPO=false
[2022-05-04T19:12:15.079Z] + echo false
[2022-05-04T19:12:15.079Z] + tr [:upper:] [:lower:]
[2022-05-04T19:12:15.079Z] + TEST_ESGF_COMPUTE_API_REPO=false
[2022-05-04T19:12:15.079Z] + echo true
[2022-05-04T19:12:15.079Z] + tr [:upper:] [:lower:]
[2022-05-04T19:12:15.079Z] + TEST_LOCAL_NOTEBOOKS=true
[2022-05-04T19:12:15.079Z] + NOTEBOOKS_TO_TEST=
[2022-05-04T19:12:15.079Z] + [ xfalse = xtrue ]
[2022-05-04T19:12:15.079Z] + [ xtrue = xtrue ]
[2022-05-04T19:12:15.079Z] + NOTEBOOKS_TO_TEST= pavics-sdi-master/docs/source/notebooks/*.ipynb
[2022-05-04T19:12:15.079Z] + [ xfalse = xtrue ]
[2022-05-04T19:12:15.079Z] + [ xtrue = xtrue ]
[2022-05-04T19:12:15.079Z] + NOTEBOOKS_TO_TEST= pavics-sdi-master/docs/source/notebooks/*.ipynb finch-master/docs/source/notebooks/*.ipynb
[2022-05-04T19:12:15.079Z] + [ xtrue = xtrue ]
[2022-05-04T19:12:15.079Z] + NOTEBOOKS_TO_TEST= pavics-sdi-master/docs/source/notebooks/*.ipynb finch-master/docs/source/notebooks/*.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/*.ipynb
[2022-05-04T19:12:15.079Z] + SETUP_SCRIPT=PAVICS-landing-master/content/notebooks/climate_indicators/setup_dirlayout.sh
[2022-05-04T19:12:15.079Z] + [ -x PAVICS-landing-master/content/notebooks/climate_indicators/setup_dirlayout.sh ]
[2022-05-04T19:12:15.079Z] + PAVICS-landing-master/content/notebooks/climate_indicators/setup_dirlayout.sh
[2022-05-04T19:12:15.079Z] + realpath PAVICS-landing-master/content/notebooks/climate_indicators/setup_dirlayout.sh
[2022-05-04T19:12:15.079Z] + THIS_FILE=/home/jenkins/agent/workspace/_workflow-tests_new-docker-build/PAVICS-landing-master/content/notebooks/climate_indicators/setup_dirlayout.sh
[2022-05-04T19:12:15.079Z] + dirname /home/jenkins/agent/workspace/_workflow-tests_new-docker-build/PAVICS-landing-master/content/notebooks/climate_indicators/setup_dirlayout.sh
[2022-05-04T19:12:15.079Z] + THIS_DIR=/home/jenkins/agent/workspace/_workflow-tests_new-docker-build/PAVICS-landing-master/content/notebooks/climate_indicators
[2022-05-04T19:12:15.079Z] + NOTEBOOK_3_OUTDIR_BASE=/notebook_dir/writable-workspace/tmp/tutorial3
[2022-05-04T19:12:15.079Z] + mkdir -p /notebook_dir/writable-workspace/tmp/tutorial3
[2022-05-04T19:12:15.079Z] + unzip /home/jenkins/agent/workspace/_workflow-tests_new-docker-build/PAVICS-landing-master/content/notebooks/climate_indicators/output.zip -d /notebook_dir/writable-workspace/tmp/tutorial3/
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[2022-05-04T19:12:15.897Z]   inflating: /notebook_dir/writable-workspace/tmp/tutorial3/output/tx_mean_YS_GFDL-ESM2M_historical+rcp45_r1i1p1_na10kgrid_qm-moving-50bins-detrend_1970-2100.nc  
[2022-05-04T19:12:15.897Z]   inflating: /notebook_dir/writable-workspace/tmp/tutorial3/output/tx_mean_YS_CanESM2_historical+rcp85_r1i1p1_na10kgrid_qm-moving-50bins-detrend_1970-2100.nc  
[2022-05-04T19:12:15.897Z]   inflating: /notebook_dir/writable-workspace/tmp/tutorial3/output/tx_mean_YS_CanESM2_historical+rcp45_r1i1p1_na10kgrid_qm-moving-50bins-detrend_1970-2100.nc  
[2022-05-04T19:12:15.897Z]   inflating: /notebook_dir/writable-workspace/tmp/tutorial3/output/tx_mean_YS_CMCC-CMS_historical+rcp85_r1i1p1_na10kgrid_qm-moving-50bins-detrend_1970-2100.nc  
[2022-05-04T19:12:15.897Z]   inflating: /notebook_dir/writable-workspace/tmp/tutorial3/output/tx_mean_YS_CMCC-CMS_historical+rcp45_r1i1p1_na10kgrid_qm-moving-50bins-detrend_1970-2100.nc  
[2022-05-04T19:12:15.897Z]   inflating: /notebook_dir/writable-workspace/tmp/tutorial3/output/tx_mean_YS_BNU-ESM_historical+rcp85_r1i1p1_na10kgrid_qm-moving-50bins-detrend_1970-2100.nc  
[2022-05-04T19:12:15.897Z]   inflating: /notebook_dir/writable-workspace/tmp/tutorial3/output/tx_mean_YS_BNU-ESM_historical+rcp45_r1i1p1_na10kgrid_qm-moving-50bins-detrend_1970-2100.nc  
[2022-05-04T19:12:16.154Z]   inflating: /notebook_dir/writable-workspace/tmp/tutorial3/output/tx_mean_YS_ACCESS1-3_historical+rcp85_r1i1p1_na10kgrid_qm-moving-50bins-detrend_1970-2100.nc  
[2022-05-04T19:12:16.154Z]   inflating: /notebook_dir/writable-workspace/tmp/tutorial3/output/tx_mean_YS_ACCESS1-3_historical+rcp45_r1i1p1_na10kgrid_qm-moving-50bins-detrend_1970-2100.nc  
[2022-05-04T19:12:16.154Z] + HOMEPAGE_ROOT_DIR=/notebook_dir/pavics-homepage
[2022-05-04T19:12:16.154Z] + mkdir -p /notebook_dir/pavics-homepage
[2022-05-04T19:12:16.154Z] + ln -sv /home/jenkins/agent/workspace/_workflow-tests_new-docker-build/PAVICS-landing-master/content/notebooks/climate_indicators/tutorial_data /notebook_dir/pavics-homepage/tutorial_data
[2022-05-04T19:12:16.154Z] '/notebook_dir/pavics-homepage/tutorial_data' -> '/home/jenkins/agent/workspace/_workflow-tests_new-docker-build/PAVICS-landing-master/content/notebooks/climate_indicators/tutorial_data'
[2022-05-04T19:12:16.154Z] + [ xfalse = xtrue ]
[2022-05-04T19:12:16.154Z] + [ xfalse = xtrue ]
[2022-05-04T19:12:16.154Z] + [ xtrue = xtrue ]
[2022-05-04T19:12:16.154Z] + NOTEBOOKS_TO_TEST= pavics-sdi-master/docs/source/notebooks/*.ipynb finch-master/docs/source/notebooks/*.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/*.ipynb notebooks/*.ipynb
[2022-05-04T19:12:16.154Z] + ./runtest  pavics-sdi-master/docs/source/notebooks/*.ipynb finch-master/docs/source/notebooks/*.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/*.ipynb notebooks/*.ipynb
[2022-05-04T19:12:16.154Z] + [ -n  ]
[2022-05-04T19:12:16.154Z] + [ ! -z pavics.ouranos.ca ]
[2022-05-04T19:12:16.154Z] + echo Will run notebooks against pavics.ouranos.ca
[2022-05-04T19:12:16.154Z] Will run notebooks against pavics.ouranos.ca
[2022-05-04T19:12:16.154Z] + [ -z  ]
[2022-05-04T19:12:16.155Z] + sed -i /\(\.ncml\|TEST_USE_PROD_DATA\)/!s/pavics.ouranos.ca/pavics.ouranos.ca/g pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb pavics-sdi-master/docs/source/notebooks/climex.ipynb pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb pavics-sdi-master/docs/source/notebooks/forecasts.ipynb pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb pavics-sdi-master/docs/source/notebooks/opendap.ipynb pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb pavics-sdi-master/docs/source/notebooks/regridding.ipynb pavics-sdi-master/docs/source/notebooks/rendering.ipynb pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb pavics-sdi-master/docs/source/notebooks/subsetting.ipynb finch-master/docs/source/notebooks/dap_subset.ipynb finch-master/docs/source/notebooks/finch-usage.ipynb finch-master/docs/source/notebooks/subset.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb notebooks/hummingbird.ipynb notebooks/stress-tests.ipynb
[2022-05-04T19:12:16.155Z] + git diff
[2022-05-04T19:12:16.155Z] + export PYTHONWARNINGS=ignore:Unverified HTTPS request
[2022-05-04T19:12:16.155Z] + py.test --nbval pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb pavics-sdi-master/docs/source/notebooks/climex.ipynb pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb pavics-sdi-master/docs/source/notebooks/forecasts.ipynb pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb pavics-sdi-master/docs/source/notebooks/opendap.ipynb pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb pavics-sdi-master/docs/source/notebooks/regridding.ipynb pavics-sdi-master/docs/source/notebooks/rendering.ipynb pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb pavics-sdi-master/docs/source/notebooks/subsetting.ipynb finch-master/docs/source/notebooks/dap_subset.ipynb finch-master/docs/source/notebooks/finch-usage.ipynb finch-master/docs/source/notebooks/subset.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb notebooks/hummingbird.ipynb notebooks/stress-tests.ipynb --sanitize-with notebooks/output-sanitize.cfg
[2022-05-04T19:12:19.440Z] ============================= test session starts ==============================
[2022-05-04T19:12:19.440Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-05-04T19:12:19.440Z] rootdir: /home/jenkins/agent/workspace/_workflow-tests_new-docker-build
[2022-05-04T19:12:19.440Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-05-04T19:12:19.440Z] collected 222 items
[2022-05-04T19:12:19.440Z] 
[2022-05-04T19:12:28.660Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  3%]
[2022-05-04T19:12:37.031Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  5%]
[2022-05-04T19:12:46.646Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [  9%]
[2022-05-04T19:13:02.992Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 13%]
[2022-05-04T19:18:37.299Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ..........          [ 18%]
[2022-05-04T19:18:42.895Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 20%]
[2022-05-04T19:19:01.078Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 21%]
[2022-05-04T19:19:24.437Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 23%]
[2022-05-04T19:19:25.277Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 24%]
[2022-05-04T19:19:30.864Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 27%]
[2022-05-04T19:19:36.339Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 29%]
[2022-05-04T19:19:57.936Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 36%]
[2022-05-04T19:21:04.170Z] ..............                                                           [ 42%]
[2022-05-04T19:21:05.377Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-05-04T19:21:07.553Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 48%]
[2022-05-04T19:21:47.084Z] .................                                                        [ 55%]
[2022-05-04T19:22:02.381Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 58%]
[2022-05-04T19:22:15.941Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 62%]
[2022-05-04T19:22:26.302Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 65%]
[2022-05-04T19:23:14.783Z] finch-master/docs/source/notebooks/subset.ipynb .....................    [ 74%]
[2022-05-04T19:23:16.697Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 75%]
[2022-05-04T19:23:21.171Z] ......                                                                   [ 77%]
[2022-05-04T19:23:59.921Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 78%]
[2022-05-04T19:24:19.935Z] .............                                                            [ 84%]
[2022-05-04T19:24:29.971Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 84%]
[2022-05-04T19:25:58.960Z] ....s.                                                                   [ 87%]
[2022-05-04T19:26:05.542Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 87%]
[2022-05-04T19:26:11.648Z] ...                                                                      [ 89%]
[2022-05-04T19:26:26.566Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 89%]
[2022-05-04T19:26:52.095Z] ......                                                                   [ 92%]
[2022-05-04T19:26:55.494Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-05-04T19:30:26.621Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-05-04T19:30:26.621Z] 
[2022-05-04T19:30:26.621Z] ================= 221 passed, 1 skipped in 1087.97s (0:18:07) ==================
[2022-05-04T19:30:26.889Z] + EXIT_CODE=0
[2022-05-04T19:30:26.889Z] + echo false
[2022-05-04T19:30:26.889Z] + tr [:upper:] [:lower:]
[2022-05-04T19:30:26.889Z] + SAVE_RESULTING_NOTEBOOK=false
[2022-05-04T19:30:26.889Z] + [ xfalse = xtrue ]
[2022-05-04T19:30:26.889Z] + exit 0
[2022-05-04T19:30:26.889Z] + EXIT_CODE=0
[2022-05-04T19:30:26.889Z] + ENV_DUMP_DIR=buildout/env-dump
[2022-05-04T19:30:26.889Z] + mkdir -p buildout/env-dump
[2022-05-04T19:30:26.889Z] + ENV_EXPORT_FILE=buildout/env-dump/environment-export-birdy.yml
[2022-05-04T19:30:26.889Z] + rm -fv buildout/env-dump/environment-export-birdy.yml
[2022-05-04T19:30:26.889Z] + conda env export -n birdy
[2022-05-04T19:30:41.899Z] + LIST_EXPLICIT_FILE=buildout/env-dump/conda-list-explicit-birdy.txt
[2022-05-04T19:30:41.899Z] + rm -fv buildout/env-dump/conda-list-explicit-birdy.txt
[2022-05-04T19:30:41.899Z] + conda list -n birdy --explicit
[2022-05-04T19:30:47.179Z] + PIP_FREEZE_FILE=buildout/env-dump/pip-freeze-birdy-requirements.txt
[2022-05-04T19:30:47.179Z] + rm -fv buildout/env-dump/pip-freeze-birdy-requirements.txt
[2022-05-04T19:30:47.179Z] + pip freeze
[2022-05-04T19:30:48.566Z] + exit 0
[Pipeline] }
[Pipeline] // withCredentials
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] archiveArtifacts
[2022-05-04T19:30:48.681Z] Archiving artifacts
[2022-05-04T19:30:48.735Z] Recording fingerprints
[Pipeline] archiveArtifacts
[2022-05-04T19:30:48.772Z] Archiving artifacts
[2022-05-04T19:30:50.629Z] Recording fingerprints
[Pipeline] archiveArtifacts
[2022-05-04T19:30:50.778Z] Archiving artifacts
[2022-05-04T19:30:50.793Z] Recording fingerprints
[Pipeline] archiveArtifacts
[2022-05-04T19:30:50.830Z] Archiving artifacts
[2022-05-04T19:30:50.869Z] Recording fingerprints
[Pipeline] archiveArtifacts
[2022-05-04T19:30:50.902Z] Archiving artifacts
[2022-05-04T19:30:53.358Z] Recording fingerprints
[Pipeline] archiveArtifacts
[2022-05-04T19:30:53.542Z] Archiving artifacts
[2022-05-04T19:30:53.577Z] Recording fingerprints
[Pipeline] archiveArtifacts
[2022-05-04T19:30:53.606Z] Archiving artifacts
[2022-05-04T19:30:54.167Z] Recording fingerprints
[Pipeline] archiveArtifacts
[2022-05-04T19:30:54.222Z] Archiving artifacts
[2022-05-04T19:30:54.241Z] ‘buildout/*.output.ipynb’ doesn’t match anything: ‘buildout’ exists but not ‘buildout/*.output.ipynb’
[2022-05-04T19:30:54.241Z] No artifacts found that match the file pattern "buildout/*.output.ipynb". Configuration error?
[Pipeline] archiveArtifacts
[2022-05-04T19:30:54.253Z] Archiving artifacts
[2022-05-04T19:30:54.270Z] Recording fingerprints
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // timeout
[Pipeline] }
[Pipeline] // timestamps
[Pipeline] }
[Pipeline] // ansiColor
[Pipeline] }
$ docker stop --time=1 27a9a6daadde82a6ed366550d588673f415ab09d09ed71aad9cf106dae7dd054
$ docker rm -f 27a9a6daadde82a6ed366550d588673f415ab09d09ed71aad9cf106dae7dd054
[Pipeline] // withDockerContainer
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS