From 84313e84dc91dc5637bd6caf461c19104f54d375 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 7 Apr 2022 09:20:29 -0400
Subject: [PATCH 01/34] release: update to use image
 pavics/workflow-tests:220407

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index e07652aa..a1096ff6 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220401"
+            image "pavics/workflow-tests:220407"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index c7cc9ea8..d0f0bbdc 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220401
+FROM pavics/workflow-tests:220407
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 0b1a1338..7b0a772b 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220401"
+    DOCKER_IMAGE="pavics/workflow-tests:220407"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index b6e60684..c17798e6 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220401"
+    DOCKER_IMAGE="pavics/workflow-tests:220407"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From 3a0b90ebf9a21f678409829da5009887780eb8ce Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 7 Apr 2022 22:02:12 -0400
Subject: [PATCH 02/34] docker: get dask dashboard and "panel serve" to work

Add `jupyter-server-proxy`, `dask-labextension` and enable
`panel.io.jupyter_server_extension`.

The `jupyter-server-proxy` allows to proxy URL like
"http://127.0.0.1:8787/status" (dask dashboard URL sample) to
"https://pavics.ouranos.ca/jupyter/user-redirect/proxy/8787/status"
which the `dask-labextension` will accept.

http://127.0.0.1:8787/status
is mapped to
https://pavics.ouranos.ca/jupyter/user-redirect/proxy/8787/status

For "panel serve", we can do it this way:

`! panel serve --allow-websocket-origin=pavics.ouranos.ca --port 5007 /notebook_dir/writable-workspace/tmp-test/test-panel.ipynb`

2022-04-08 01:33:50,268 Starting Bokeh server version 2.4.2 (running on Tornado 6.1)
2022-04-08 01:33:50,270 User authentication hooks NOT provided (default user enabled)
2022-04-08 01:33:50,272 Bokeh app running at: http://localhost:5007/test-panel
2022-04-08 01:33:50,272 Starting Bokeh server with process id: 2155
2022-04-08 01:34:06,179 WebSocket connection opened
2022-04-08 01:34:06,179 ServerConnection created

Then open a new browser tab to https://pavics.ouranos.ca/jupyter, login
again if it asks, and to go this URL:
https://pavics.ouranos.ca/jupyter/user-redirect/proxy/5007/test-panel

http://localhost:5007/test-panel
is mapped to
https://pavics.ouranos.ca/jupyter/user-redirect/proxy/5007/test-panel
---
 docker/Dockerfile      | 4 +++-
 docker/environment.yml | 4 ++++
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/docker/Dockerfile b/docker/Dockerfile
index 6c19bf04..096f8651 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -70,7 +70,9 @@ RUN python -m ipykernel install --name birdy
 # https://github.com/plotly/jupyter-dash/issues/49
 RUN jupyter lab build
 
-RUN jupyter serverextension enable voila --sys-prefix
+RUN jupyter serverextension enable voila --sys-prefix \
+    && jupyter serverextension enable panel.io.jupyter_server_extension --sys-prefix \
+    && jupyter serverextension list
 #    && jupyter labextension install jupyterlab-clipboard
 
 # This should be "master" but commit
diff --git a/docker/environment.yml b/docker/environment.yml
index 62a156c7..ccc1cd85 100644
--- a/docker/environment.yml
+++ b/docker/environment.yml
@@ -170,6 +170,10 @@ dependencies:
   # xeus-python: back-end kernel implementing the Jupyter Debug Protocol
   - xeus-python
   - jupyter-dash
+  # https:://github.com/jupyterhub/jupyter-server-proxy
+  - jupyter-server-proxy
+  # https://github.com/dask/dask-labextension
+  - dask-labextension
   # Force newer nodejs for 'jupyter lab build' issue
   # https://github.com/jupyterlab/jupyterlab/issues/11726#issuecomment-998901247
   # TODO: remove nodejs once all extensions move to prebuilt extensions, see comment

From 68d7c4d902afb61e3e3f2c2fc221b579057d57db Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 7 Apr 2022 22:05:42 -0400
Subject: [PATCH 03/34] release: update to use image
 pavics/workflow-tests:220407.1

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index a1096ff6..10082d9d 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220407"
+            image "pavics/workflow-tests:220407.1"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index d0f0bbdc..649c3c5d 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220407
+FROM pavics/workflow-tests:220407.1
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 7b0a772b..62bcb299 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220407"
+    DOCKER_IMAGE="pavics/workflow-tests:220407.1"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index c17798e6..dc1f1e98 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220407"
+    DOCKER_IMAGE="pavics/workflow-tests:220407.1"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From ef0bf0647991df529813abd68078e748363d157b Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 12 Apr 2022 07:49:36 -0400
Subject: [PATCH 04/34] release: update to use image
 pavics/workflow-tests:220412

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index 10082d9d..9a2f0846 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220407.1"
+            image "pavics/workflow-tests:220412"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index 649c3c5d..75a80a66 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220407.1
+FROM pavics/workflow-tests:220412
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 62bcb299..00da217b 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220407.1"
+    DOCKER_IMAGE="pavics/workflow-tests:220412"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index dc1f1e98..4c15d5a9 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220407.1"
+    DOCKER_IMAGE="pavics/workflow-tests:220412"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From b812f376e46a7e0b6eab75db886a5a33a7e7e4d5 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 14 Apr 2022 13:02:50 -0400
Subject: [PATCH 05/34] docker: add jupyter-panel-proxy to hopefully able to
 customize panel serve display url

Found solution here
https://discourse.holoviz.org/t/is-it-possible-to-deploy-and-run-panel-apps-via-jupyter-hub/189

Not sure if it works.
---
 docker/environment.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/docker/environment.yml b/docker/environment.yml
index ccc1cd85..b5c7c8e4 100644
--- a/docker/environment.yml
+++ b/docker/environment.yml
@@ -5,6 +5,7 @@ channels:
   - cdat
   - bokeh
   - plotly  # for jupyter-dash
+  - pyviz  # for jupyter-panel-proxy
   - defaults
 
 dependencies:
@@ -174,6 +175,8 @@ dependencies:
   - jupyter-server-proxy
   # https://github.com/dask/dask-labextension
   - dask-labextension
+  # https://github.com/holoviz/jupyter-panel-proxy
+  - jupyter-panel-proxy
   # Force newer nodejs for 'jupyter lab build' issue
   # https://github.com/jupyterlab/jupyterlab/issues/11726#issuecomment-998901247
   # TODO: remove nodejs once all extensions move to prebuilt extensions, see comment

From 3a2538725481fd71678af3c4c54f7b57d4f8feef Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 14 Apr 2022 13:04:38 -0400
Subject: [PATCH 06/34] release: update to use image
 pavics/workflow-tests:220414

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index 9a2f0846..aedd5025 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220412"
+            image "pavics/workflow-tests:220414"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index 75a80a66..3a84af83 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220412
+FROM pavics/workflow-tests:220414
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 00da217b..396d43d0 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220412"
+    DOCKER_IMAGE="pavics/workflow-tests:220414"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index 4c15d5a9..ed062cc2 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220412"
+    DOCKER_IMAGE="pavics/workflow-tests:220414"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From 088bc96b97d98b98e4849a814eb3420bf976d1d0 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 21 Apr 2022 21:43:44 -0400
Subject: [PATCH 07/34] binder: add TEST-panel.ipynb for testing

---
 binder/Dockerfile | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index 3a84af83..0296a9d9 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -12,6 +12,8 @@ WORKDIR /notebooks
 
 RUN ./downloadrepos; DEPLOY_PAVICS_LANDING_NB=1 ./reorg-notebooks; rm -rfv downloadrepos default_build_params reorg-notebooks; chown -R jenkins:jenkins .
 
-RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
+RUN wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/0c7e0ab4af7b51aa5320b873b7f1bf641fc03e27/test-panel.ipynb -O TEST-panel.ipynb; chown jenkins:jenkins TEST-panel.ipynb
+
+# RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 
 USER jenkins

From 2365bcb8b9cfa047ed2b116a15c3e3a116d7386f Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 21 Apr 2022 22:50:14 -0400
Subject: [PATCH 08/34] binder: disable other notebooks and add
 TEST-panel-servable.ipynb for testing

---
 binder/Dockerfile | 14 ++++++++------
 1 file changed, 8 insertions(+), 6 deletions(-)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index 0296a9d9..fe04c43a 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -2,17 +2,19 @@ FROM pavics/workflow-tests:220414
 
 USER root
 
-COPY notebooks /notebooks
+#COPY notebooks /notebooks
 
-COPY default_build_params /notebooks
-COPY downloadrepos /notebooks
-COPY binder/reorg-notebooks /notebooks
+#COPY default_build_params /notebooks
+#COPY downloadrepos /notebooks
+#COPY binder/reorg-notebooks /notebooks
 
 WORKDIR /notebooks
 
-RUN ./downloadrepos; DEPLOY_PAVICS_LANDING_NB=1 ./reorg-notebooks; rm -rfv downloadrepos default_build_params reorg-notebooks; chown -R jenkins:jenkins .
+#RUN ./downloadrepos; DEPLOY_PAVICS_LANDING_NB=1 ./reorg-notebooks; rm -rfv downloadrepos default_build_params reorg-notebooks; chown -R jenkins:jenkins .
 
-RUN wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/0c7e0ab4af7b51aa5320b873b7f1bf641fc03e27/test-panel.ipynb -O TEST-panel.ipynb; chown jenkins:jenkins TEST-panel.ipynb
+ENV BOKEH_ALLOW_WS_ORIGIN "*"
+
+RUN wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-binder.ipynb -O TEST-panel-binder.ipynb; wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-servable.ipynb -O TEST-panel-servable.ipynb; chown jenkins:jenkins *.ipynb
 
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 

From 4f15b1c98b0d891f3089cf9605917e8b0cb01934 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 21 Apr 2022 22:59:05 -0400
Subject: [PATCH 09/34] binder: fix notebook dir not writable

---
 binder/Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index fe04c43a..c822984a 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -14,7 +14,7 @@ WORKDIR /notebooks
 
 ENV BOKEH_ALLOW_WS_ORIGIN "*"
 
-RUN wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-binder.ipynb -O TEST-panel-binder.ipynb; wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-servable.ipynb -O TEST-panel-servable.ipynb; chown jenkins:jenkins *.ipynb
+RUN wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-binder.ipynb -O TEST-panel-binder.ipynb; wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-servable.ipynb -O TEST-panel-servable.ipynb; chown jenkins:jenkins -R .
 
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 

From 47ef7b0c668acc84cb9c1c7cedc2f135aa54dd3a Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 21 Apr 2022 23:10:19 -0400
Subject: [PATCH 10/34] binder: test Panel launcher subdir support

---
 binder/Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index c822984a..4bee44a0 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -14,7 +14,7 @@ WORKDIR /notebooks
 
 ENV BOKEH_ALLOW_WS_ORIGIN "*"
 
-RUN wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-binder.ipynb -O TEST-panel-binder.ipynb; wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-servable.ipynb -O TEST-panel-servable.ipynb; chown jenkins:jenkins -R .
+RUN wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-binder.ipynb -O TEST-panel-binder.ipynb; wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-servable.ipynb -O TEST-panel-servable.ipynb; mkdir -p subdir1/subdir2; cp TEST-panel-servable.ipynb subdir1/servable1.ipynb; cp TEST-panel-servable.ipynb subdir1/subdir2/servable2.ipynb; cp TEST-panel-servable.ipynb TEST-panel-servable-Copy.ipynb; chown jenkins:jenkins -R .
 
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 

From 9b176c030571e8254cf1e13b50506aa6beb13a89 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Fri, 22 Apr 2022 15:22:48 -0400
Subject: [PATCH 11/34] docker: try to fix jupyter-panel-proxy launcher blank
 page

---
 docker/Dockerfile | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/docker/Dockerfile b/docker/Dockerfile
index 096f8651..be8d7056 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -98,6 +98,9 @@ RUN wget https://raw.githubusercontent.com/jupyter/docker-stacks/$DOCKER_STACKS_
     mkdir /notebook_dir && chown jenkins /notebook_dir && \
     chmod a+rwX -R /opt/conda/envs/birdy/fonts
 
+# For jupyter-panel-proxy launcher.
+ENV BOKEH_ALLOW_WS_ORIGIN "*"
+
 # problem running start-notebook.sh when being root
 # the jupyter/base-notebook image also do not default to root user so we do the same here
 USER jenkins

From bb7a1b7b3e46b3e72229527f600b5c8ecaca79a1 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Fri, 22 Apr 2022 15:23:21 -0400
Subject: [PATCH 12/34] release: update to use image
 pavics/workflow-tests:220422

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index aedd5025..0e9bd16d 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220414"
+            image "pavics/workflow-tests:220422"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index 3a84af83..f22371db 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220414
+FROM pavics/workflow-tests:220422
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 396d43d0..4bd40605 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220414"
+    DOCKER_IMAGE="pavics/workflow-tests:220422"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index ed062cc2..c368eebe 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220414"
+    DOCKER_IMAGE="pavics/workflow-tests:220422"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From 01370072f237331691e73069c0fa41b123b4ba17 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 09:23:48 -0400
Subject: [PATCH 13/34] binder: commit test notebooks to avoid external
 dependencies and guaranty reproducibility

---
 binder/Dockerfile                             |  6 +-
 binder/test-notebooks/TEST-panel-binder.ipynb | 85 +++++++++++++++++++
 .../test-notebooks/TEST-panel-servable.ipynb  | 36 ++++++++
 3 files changed, 126 insertions(+), 1 deletion(-)
 create mode 100644 binder/test-notebooks/TEST-panel-binder.ipynb
 create mode 100644 binder/test-notebooks/TEST-panel-servable.ipynb

diff --git a/binder/Dockerfile b/binder/Dockerfile
index 4bee44a0..9604888e 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -14,7 +14,11 @@ WORKDIR /notebooks
 
 ENV BOKEH_ALLOW_WS_ORIGIN "*"
 
-RUN wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-binder.ipynb -O TEST-panel-binder.ipynb; wget https://gist.githubusercontent.com/tlvu/f8a91585bac38af23c4f4490f94fc513/raw/30894efd1c0cd6b759b2a911e6fe50f16deae14d/TEST-panel-servable.ipynb -O TEST-panel-servable.ipynb; mkdir -p subdir1/subdir2; cp TEST-panel-servable.ipynb subdir1/servable1.ipynb; cp TEST-panel-servable.ipynb subdir1/subdir2/servable2.ipynb; cp TEST-panel-servable.ipynb TEST-panel-servable-Copy.ipynb; chown jenkins:jenkins -R .
+COPY binder/test-notebooks /notebooks
+
+RUN mkdir -p subdir1/subdir2; cp TEST-panel-servable.ipynb subdir1/servable1.ipynb; cp TEST-panel-servable.ipynb subdir1/subdir2/servable2.ipynb; cp TEST-panel-servable.ipynb TEST-panel-servable-Copy.ipynb
+
+RUN chown jenkins:jenkins -R .
 
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 
diff --git a/binder/test-notebooks/TEST-panel-binder.ipynb b/binder/test-notebooks/TEST-panel-binder.ipynb
new file mode 100644
index 00000000..284bd260
--- /dev/null
+++ b/binder/test-notebooks/TEST-panel-binder.ipynb
@@ -0,0 +1,85 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "id": "d79b1053-3144-47d4-824f-49a3666d68e6",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "WARNING:bokeh.server.util:Host wildcard '*' will allow connections originating from multiple (or possibly all) hostnames or IPs. Use non-wildcard values to restrict access explicitly\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Launching server at http://localhost:5007\n"
+     ]
+    }
+   ],
+   "source": [
+    "import panel as pn\n",
+    "srv = pn.panel(\n",
+    "    pn.widgets.FloatInput(name='an input')\n",
+    ").show(port=5007, websocket_origin=\"*\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "8f18de16-80bd-40dc-9438-ca176fc8c169",
+   "metadata": {},
+   "source": [
+    "Your current URL should look something like:\n",
+    "\n",
+    "https://hub.gke2.mybinder.org/user/ouranosinc-pavi--workflow-tests-9jerf8qk/lab/tree/TEST-panel-binder.ipynb\n",
+    "\n",
+    "Open a new browser tab, then to go to something like this URL (replace `lab/tree/TEST-panel-binder.ipynb` with `proxy/5007/`):\n",
+    "\n",
+    "https://hub.gke2.mybinder.org/user/ouranosinc-pavi--workflow-tests-9jerf8qk/proxy/5007/"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2d39a37c-8df6-4f27-9aeb-54181f35c295",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "srv.stop()  # To stop the server."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "fb898f21-f543-40b4-8bf4-b701559b842f",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.8.13"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/binder/test-notebooks/TEST-panel-servable.ipynb b/binder/test-notebooks/TEST-panel-servable.ipynb
new file mode 100644
index 00000000..16e5ca2a
--- /dev/null
+++ b/binder/test-notebooks/TEST-panel-servable.ipynb
@@ -0,0 +1,36 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7acdd82a-bc2d-443c-8fa8-e432de9cfa30",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import panel as pn\n",
+    "pn.panel('# Ceci est un test').servable()"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.8.13"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}

From b74662d888da5fc76d345569c913d3b2a69a985c Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 12:14:37 -0400
Subject: [PATCH 14/34] binder: test whether Panel launcher requires writable
 perm at current launch dir

---
 binder/Dockerfile | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index 9604888e..72514fc8 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -18,7 +18,8 @@ COPY binder/test-notebooks /notebooks
 
 RUN mkdir -p subdir1/subdir2; cp TEST-panel-servable.ipynb subdir1/servable1.ipynb; cp TEST-panel-servable.ipynb subdir1/subdir2/servable2.ipynb; cp TEST-panel-servable.ipynb TEST-panel-servable-Copy.ipynb
 
-RUN chown jenkins:jenkins -R .
+# test whether Panel launcher requires writable perm at current launch dir
+# RUN chown jenkins:jenkins -R .
 
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 

From 115798173dae1b2c800b0c66ad88d80def502463 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 13:53:39 -0400
Subject: [PATCH 15/34] binder: confirmed Panel launcher do not need writable
 perm at current launch dir

---
 binder/Dockerfile | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index 72514fc8..9604888e 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -18,8 +18,7 @@ COPY binder/test-notebooks /notebooks
 
 RUN mkdir -p subdir1/subdir2; cp TEST-panel-servable.ipynb subdir1/servable1.ipynb; cp TEST-panel-servable.ipynb subdir1/subdir2/servable2.ipynb; cp TEST-panel-servable.ipynb TEST-panel-servable-Copy.ipynb
 
-# test whether Panel launcher requires writable perm at current launch dir
-# RUN chown jenkins:jenkins -R .
+RUN chown jenkins:jenkins -R .
 
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 

From 4a3f00a8b443490e2a200aa920433490dfbdf4f4 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 19:49:32 -0400
Subject: [PATCH 16/34] binder: try to fix conda install on cli

```
! conda install -c pyviz/label/dev jupyter-panel-proxy

Collecting package metadata (current_repodata.json): failed

NotWritableError: The current user does not have write permissions to a
required path.
  path: /opt/conda/pkgs/cache/37adb69c.json
  uid: 1000
  gid: 1000

If you feel that permissions on this path are set incorrectly, you can
manually
change them by executing

  $ sudo chown 1000:1000 /opt/conda/pkgs/cache/37adb69c.json

In general, it's not advisable to use 'sudo conda'.
```
---
 binder/Dockerfile | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index 9604888e..4c5d552e 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -20,6 +20,8 @@ RUN mkdir -p subdir1/subdir2; cp TEST-panel-servable.ipynb subdir1/servable1.ipy
 
 RUN chown jenkins:jenkins -R .
 
+RUN chmod a+rwX -R /opt/conda/pkgs/cache/
+
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 
 USER jenkins

From 5219e06e7845c4c69dc008132d17f7360cebb03c Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 20:00:51 -0400
Subject: [PATCH 17/34] binder: get latest jupyter-panel-proxy, the current one
 is 2 years old

---
 binder/Dockerfile | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index 4c5d552e..8ce31a90 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -25,3 +25,5 @@ RUN chmod a+rwX -R /opt/conda/pkgs/cache/
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 
 USER jenkins
+
+RUN conda install -c pyviz/label/dev jupyter-panel-proxy

From 6f09cd77261f2d440d6f3f405aa8b22fdf2699f5 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 20:07:41 -0400
Subject: [PATCH 18/34] docker: fix conda install cli permission error

Fix for this error:
```
! conda install -c pyviz/label/dev jupyter-panel-proxy

Collecting package metadata (current_repodata.json): failed

NotWritableError: The current user does not have write permissions to a
required path.
  path: /opt/conda/pkgs/cache/37adb69c.json
  uid: 1000
  gid: 1000

If you feel that permissions on this path are set incorrectly, you can
manually
change them by executing

  $ sudo chown 1000:1000 /opt/conda/pkgs/cache/37adb69c.json

In general, it's not advisable to use 'sudo conda'.
```
---
 docker/Dockerfile | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/docker/Dockerfile b/docker/Dockerfile
index be8d7056..c39c3eb8 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -96,7 +96,8 @@ RUN wget https://raw.githubusercontent.com/jupyter/docker-stacks/$DOCKER_STACKS_
     chmod a+rx /usr/local/bin/start.sh /usr/local/bin/start-singleuser.sh /usr/local/bin/start-notebook.sh /usr/local/bin/fix-permissions && \
     chmod a+r /etc/jupyter/jupyter_notebook_config.py && \
     mkdir /notebook_dir && chown jenkins /notebook_dir && \
-    chmod a+rwX -R /opt/conda/envs/birdy/fonts
+    chmod a+rwX -R /opt/conda/envs/birdy/fonts && \
+    chmod a+rwX -R /opt/conda/pkgs/cache
 
 # For jupyter-panel-proxy launcher.
 ENV BOKEH_ALLOW_WS_ORIGIN "*"

From e687e3ab0d59660fa4e366a945ab61150c49c197 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 20:34:05 -0400
Subject: [PATCH 19/34] docker: get dev version of jupyter-panel-proxy, current
 ver 0.1.0 is almost 2 years old

---
 docker/environment.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/docker/environment.yml b/docker/environment.yml
index b5c7c8e4..3810d6ea 100644
--- a/docker/environment.yml
+++ b/docker/environment.yml
@@ -5,7 +5,7 @@ channels:
   - cdat
   - bokeh
   - plotly  # for jupyter-dash
-  - pyviz  # for jupyter-panel-proxy
+  - pyviz/label/dev  # for jupyter-panel-proxy
   - defaults
 
 dependencies:
@@ -176,7 +176,7 @@ dependencies:
   # https://github.com/dask/dask-labextension
   - dask-labextension
   # https://github.com/holoviz/jupyter-panel-proxy
-  - jupyter-panel-proxy
+  - jupyter-panel-proxy >= 0.2.0a2
   # Force newer nodejs for 'jupyter lab build' issue
   # https://github.com/jupyterlab/jupyterlab/issues/11726#issuecomment-998901247
   # TODO: remove nodejs once all extensions move to prebuilt extensions, see comment

From 4be15cc1119b24e93755052f542fed4f7b6fb572 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 20:46:15 -0400
Subject: [PATCH 20/34] docker: fix everything executable under /opt/conda for
 all, wanted existing executable only

---
 docker/Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docker/Dockerfile b/docker/Dockerfile
index c39c3eb8..02ce8a47 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -17,7 +17,7 @@ RUN apt-get update && \
 # Change /opt/conda folder permissions for jupyter-conda extension.
 RUN groupadd --gid 1000 jenkins \
     && useradd --uid 1000 --gid jenkins --create-home jenkins && \
-    chmod -R a+rwx /opt/conda
+    chmod -R a+rwX /opt/conda
 
 COPY environment.yml /environment.yml
 

From cce6c9d84cabe654d499eb63777874ac6fcb0b8d Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 21:11:06 -0400
Subject: [PATCH 21/34] release: update to use image
 pavics/workflow-tests:220426

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index 0e9bd16d..ba96d27c 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220422"
+            image "pavics/workflow-tests:220426"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index f22371db..93f9dbe3 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220422
+FROM pavics/workflow-tests:220426
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 4bd40605..4355cbeb 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220422"
+    DOCKER_IMAGE="pavics/workflow-tests:220426"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index c368eebe..9724b9ed 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220422"
+    DOCKER_IMAGE="pavics/workflow-tests:220426"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From 79552ea69677f29d0ca8b647d4c2f72f8d14caff Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Tue, 26 Apr 2022 21:43:06 -0400
Subject: [PATCH 22/34] binder: new base image has the steps already integrated
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

The conda install step did not work, error below:

```
Step 10/13 : RUN conda install -c pyviz/label/dev jupyter-panel-proxy
 ---> Running in 3bf123abf1a8
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve.
Retrying with flexible solve.
Solving environment: ...working... failed with repodata from
current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve.
Retrying with flexible solve.
Examining @/linux-64::__linux==5.4.170=0:  17%|█▋        | 1/6
[00:00<00:00, 3591.01it/Examining @/linux-64::__glibc==2.31=0:  33%|███▎
| 2/6 [00:00<00:00, 4232.40it/s] Examining
@/linux-64::__archspec==1=x86_64:  83%|████████▎ | 5/6 [00:00<00:00,
38.59it/
Examining conflict for jupyter-panel-proxy python:  17%|█▋        | 1/6
[00:00<00:00, 9
Found conflicts! Looking for incompatible packages.
```
---
 binder/Dockerfile | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index 0bba5f8d..5ff5419c 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -12,18 +12,12 @@ WORKDIR /notebooks
 
 #RUN ./downloadrepos; DEPLOY_PAVICS_LANDING_NB=1 ./reorg-notebooks; rm -rfv downloadrepos default_build_params reorg-notebooks; chown -R jenkins:jenkins .
 
-ENV BOKEH_ALLOW_WS_ORIGIN "*"
-
 COPY binder/test-notebooks /notebooks
 
 RUN mkdir -p subdir1/subdir2; cp TEST-panel-servable.ipynb subdir1/servable1.ipynb; cp TEST-panel-servable.ipynb subdir1/subdir2/servable2.ipynb; cp TEST-panel-servable.ipynb TEST-panel-servable-Copy.ipynb
 
 RUN chown jenkins:jenkins -R .
 
-RUN chmod a+rwX -R /opt/conda/pkgs/cache/
-
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 
 USER jenkins
-
-RUN conda install -c pyviz/label/dev jupyter-panel-proxy

From 6c65cb30117d55d345685bfb8322e2dbf53beacd Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Wed, 27 Apr 2022 08:41:27 -0400
Subject: [PATCH 23/34] docker: use devel version of panel to hopefully fix
 Panel preview problem

See comment https://github.com/holoviz/panel/issues/3440#issuecomment-1110682452

To hopefully fix this error:
```
ServerApp - ERROR - Uncaught exception GET
/panel-preview/render/workdir/PAVICS-e2e-workflow-tests/binder/test-notebooks/TEST-panel-servable.ipynb
(10.10.10.7)
HTTPServerRequest(protocol='http', host='lvu.ouranos.ca:8890',
method='GET',
uri='/panel-preview/render/workdir/PAVICS-e2e-workflow-tests/binder/test-notebooks/TEST-panel-servable.ipynb',
version='HTTP/1.1', remote_ip='10.10.10.7')
Traceback (most recent call last):
  File
"/opt/conda/envs/birdy/lib/python3.8/site-packages/tornado/web.py", line
1704, in _execute
    result = await result
  File
"/opt/conda/envs/birdy/lib/python3.8/site-packages/panel/io/jupyter_server_extension.py",
line 116, in get
    page = server_html_page_for_session(
  File
"/opt/conda/envs/birdy/lib/python3.8/site-packages/bokeh/embed/server.py",
line 255, in server_html_page_for_session
    bundle = bundle_for_objs_and_resources(None, resources)
  File
"/opt/conda/envs/birdy/lib/python3.8/site-packages/bokeh/embed/bundle.py",
line 211, in bundle_for_objs_and_resources
    js_files.extend(js_resources.js_files)
  File
"/opt/conda/envs/birdy/lib/python3.8/site-packages/panel/io/resources.py",
line 299, in js_files
    dist_dir = self.dist_dir
  File
"/opt/conda/envs/birdy/lib/python3.8/site-packages/panel/io/resources.py",
line 259, in dist_dir
    if self.absolute:
AttributeError: 'Resources' object has no attribute 'absolute'
```
---
 docker/environment.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/docker/environment.yml b/docker/environment.yml
index 3810d6ea..b1691414 100644
--- a/docker/environment.yml
+++ b/docker/environment.yml
@@ -5,7 +5,7 @@ channels:
   - cdat
   - bokeh
   - plotly  # for jupyter-dash
-  - pyviz/label/dev  # for jupyter-panel-proxy
+  - pyviz/label/dev  # for jupyter-panel-proxy, panel
   - defaults
 
 dependencies:
@@ -58,7 +58,7 @@ dependencies:
   - jupyter_bokeh
   - pscript
   - h5netcdf
-  - panel
+  - panel >= 0.13.1a2
   # https://github.com/holoviz/panel
   - pyviz_comms  # (was labextension pyviz/jupyterlab_pyviz in jupyterlab v2)
   - holoviews

From dc6745158f589360573ac7f48db1f207fe30e5ea Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Wed, 27 Apr 2022 08:43:52 -0400
Subject: [PATCH 24/34] release: update to use image
 pavics/workflow-tests:220427

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index ba96d27c..ea263990 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220426"
+            image "pavics/workflow-tests:220427"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index 93f9dbe3..cbb0a285 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220426
+FROM pavics/workflow-tests:220427
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 4355cbeb..425706c2 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220426"
+    DOCKER_IMAGE="pavics/workflow-tests:220427"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index 9724b9ed..4c9a8af8 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220426"
+    DOCKER_IMAGE="pavics/workflow-tests:220427"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From 38cce4533dc40e06b465323de5f0d99cbd8e1ea5 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Wed, 27 Apr 2022 19:22:34 -0400
Subject: [PATCH 25/34] docker: manual force newer clisops, mamba somehow
 choose an older ver

---
 docker/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docker/environment.yml b/docker/environment.yml
index b1691414..c5de4da1 100644
--- a/docker/environment.yml
+++ b/docker/environment.yml
@@ -120,7 +120,7 @@ dependencies:
   #     warnings.warn(f'Downloading: {url}', DownloadWarning)
   - shapely <= 1.7.1
   # https://github.com/roocs/clisops
-  - clisops >= 0.8.0
+  - clisops >= 0.9.0
   # Universal Regridder for Geospatial Data
   # https://github.com/pangeo-data/xESMF
   # xesmf-0.6.2 requires clisops>=0.8.0

From 2c9c67fb0005162f9bd1746466029aaea230a543 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 28 Apr 2022 00:13:11 -0400
Subject: [PATCH 26/34] docker: unpin cf_xarray for clisops 0.9.0 need
 cf_xarray >= 0.7.0

Previous docker build error:
```
Encountered problems while solving:
- package clisops-0.9.0-pyh6c4a22f_0 requires cf_xarray >=0.7.0, but none of the providers can be installed
```

cf_xarray was previously pinned because of climex.ipynb (not
WPS_example.ipynb, my mistake reading the Jenkins output) performance
but it was already happening before the pin so cf_xarray might not be
the real culprit.

See issue about cf_xarray pinning here
https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/issues/100
---
 docker/environment.yml | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/docker/environment.yml b/docker/environment.yml
index c5de4da1..6d28b2cb 100644
--- a/docker/environment.yml
+++ b/docker/environment.yml
@@ -28,9 +28,6 @@ dependencies:
   - dask <= 2022.1.0
   - distributed <= 2022.1.0
 
-  # Pin cf_xarray for slow WPS_example.ipynb.
-  - cf_xarray<=0.6.3
-
   - matplotlib
     # - xarray  # from xclim and ravenpy
     # - numpy  # from xclim and ravenpy

From 856a871146fa224eb5ee911e8919008f44dc593c Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 28 Apr 2022 10:31:39 -0400
Subject: [PATCH 27/34] release: update to use image
 pavics/workflow-tests:220428

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index ea263990..fa3f1fa7 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220427"
+            image "pavics/workflow-tests:220428"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index cbb0a285..89354ec4 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220427
+FROM pavics/workflow-tests:220428
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 425706c2..4c5eb45c 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220427"
+    DOCKER_IMAGE="pavics/workflow-tests:220428"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index 4c9a8af8..0bf38a14 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220427"
+    DOCKER_IMAGE="pavics/workflow-tests:220428"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From 4e94f42b922588729765bbf703ea5ac8259446c9 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 28 Apr 2022 12:09:08 -0400
Subject: [PATCH 28/34] docker: remove handcals as it seems to interfere with
 Panel preview button

See comment https://github.com/holoviz/panel/issues/3440#issuecomment-1112182170
---
 docker/environment.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/docker/environment.yml b/docker/environment.yml
index 6d28b2cb..ce0d4d37 100644
--- a/docker/environment.yml
+++ b/docker/environment.yml
@@ -201,7 +201,9 @@ dependencies:
     # Mimics how one might format their calculation if it were written with a
     # pencil: write the symbolic formula, followed by numeric substitutions,
     # and then the result.
-    - handcalcs
+    # DISABLE handcalcs, interfere with "Panel preview" button
+    # See comment https://github.com/holoviz/panel/issues/3440#issuecomment-1112182170
+    # - handcalcs
     # https://github.com/ShopRunner/jupyter-notify
     # Jupyter Magic For Browser Notifications of Cell Completion.
     - jupyternotify

From 864b73595cbd0902843a50d82ec2ec642743b5ed Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Thu, 28 Apr 2022 12:10:07 -0400
Subject: [PATCH 29/34] release: update to use image
 pavics/workflow-tests:220428.1

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index fa3f1fa7..bcff725a 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220428"
+            image "pavics/workflow-tests:220428.1"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index 89354ec4..ebe31d15 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220428
+FROM pavics/workflow-tests:220428.1
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 4c5eb45c..488ea3b7 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220428"
+    DOCKER_IMAGE="pavics/workflow-tests:220428.1"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index 0bf38a14..a3dcc0f9 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220428"
+    DOCKER_IMAGE="pavics/workflow-tests:220428.1"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From 7011c86bbbbb4b1814a1ce39445f6eeae217bdeb Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Mon, 2 May 2022 23:40:58 -0400
Subject: [PATCH 30/34] docker: patch Panel for 'Render with Panel' button
 regression fix

Remove this patch once a Panel release contain this PR
https://github.com/holoviz/panel/pull/3469
---
 docker/Dockerfile | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/docker/Dockerfile b/docker/Dockerfile
index 02ce8a47..e20183e5 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -106,6 +106,11 @@ ENV BOKEH_ALLOW_WS_ORIGIN "*"
 # the jupyter/base-notebook image also do not default to root user so we do the same here
 USER jenkins
 
+# Patch Panel for "Render with Panel" button regression fix
+# TODO remove this patch once a Panel release contain this PR https://github.com/holoviz/panel/pull/3469.
+RUN wget https://raw.githubusercontent.com/tlvu/panel/ac8d6fb3efdfb66315af1107070a6c67affaebc8/panel/io/jupyter_server_extension.py \
+    -O /opt/conda/envs/birdy/lib/python3.8/site-packages/panel/io/jupyter_server_extension.py
+
 # follow jupyter/base-notebook image so config in jupyterhub is simpler
 # start notebook in conda environment to have working jupyter extensions
 CMD ["conda", "run", "-n", "birdy", "/usr/local/bin/start-notebook.sh"]

From 9f1863c34283c6b8f3c45a5bd8da6573468400b8 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Mon, 2 May 2022 23:42:27 -0400
Subject: [PATCH 31/34] release: update to use image
 pavics/workflow-tests:220502

---
 Jenkinsfile       | 2 +-
 binder/Dockerfile | 2 +-
 launchcontainer   | 2 +-
 launchnotebook    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index bcff725a..29db25ed 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -10,7 +10,7 @@ pipeline {
     // https://jenkins.io/doc/book/pipeline/syntax/
     agent {
         docker {
-            image "pavics/workflow-tests:220428.1"
+            image "pavics/workflow-tests:220502"
             label 'linux && docker'
         }
     }
diff --git a/binder/Dockerfile b/binder/Dockerfile
index ebe31d15..cbb38419 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -1,4 +1,4 @@
-FROM pavics/workflow-tests:220428.1
+FROM pavics/workflow-tests:220502
 
 USER root
 
diff --git a/launchcontainer b/launchcontainer
index 488ea3b7..d074153e 100755
--- a/launchcontainer
+++ b/launchcontainer
@@ -1,7 +1,7 @@
 #!/bin/sh -x
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220428.1"
+    DOCKER_IMAGE="pavics/workflow-tests:220502"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then
diff --git a/launchnotebook b/launchnotebook
index a3dcc0f9..f8a1b445 100755
--- a/launchnotebook
+++ b/launchnotebook
@@ -7,7 +7,7 @@ if [ -z "$PORT" ]; then
 fi
 
 if [ -z "$DOCKER_IMAGE" ]; then
-    DOCKER_IMAGE="pavics/workflow-tests:220428.1"
+    DOCKER_IMAGE="pavics/workflow-tests:220502"
 fi
 
 if [ -z "$CONTAINER_NAME" ]; then

From e42ad29cc9dcfcd7d59e0e8f529c280c7062ec7a Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Wed, 4 May 2022 13:24:26 -0400
Subject: [PATCH 32/34] binder: undo temporary changes for testing Holoviz
 Panel

---
 binder/Dockerfile | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/binder/Dockerfile b/binder/Dockerfile
index 8a9c42fd..9ac81ef9 100644
--- a/binder/Dockerfile
+++ b/binder/Dockerfile
@@ -2,21 +2,21 @@ FROM pavics/workflow-tests:220502
 
 USER root
 
-#COPY notebooks /notebooks
+COPY notebooks /notebooks
 
-#COPY default_build_params /notebooks
-#COPY downloadrepos /notebooks
-#COPY binder/reorg-notebooks /notebooks
+COPY default_build_params /notebooks
+COPY downloadrepos /notebooks
+COPY binder/reorg-notebooks /notebooks
 
 WORKDIR /notebooks
 
-#RUN ./downloadrepos; DEPLOY_PAVICS_LANDING_NB=1 ./reorg-notebooks; rm -rfv downloadrepos default_build_params reorg-notebooks; chown -R jenkins:jenkins .
+RUN ./downloadrepos; DEPLOY_PAVICS_LANDING_NB=1 ./reorg-notebooks; rm -rfv downloadrepos default_build_params reorg-notebooks; chown -R jenkins:jenkins .
 
-COPY binder/test-notebooks /notebooks
+#COPY binder/test-notebooks /notebooks
 
-RUN mkdir -p subdir1/subdir2; cp TEST-panel-servable.ipynb subdir1/servable1.ipynb; cp TEST-panel-servable.ipynb subdir1/subdir2/servable2.ipynb; cp TEST-panel-servable.ipynb TEST-panel-servable-Copy.ipynb
+#RUN mkdir -p subdir1/subdir2; cp TEST-panel-servable.ipynb subdir1/servable1.ipynb; cp TEST-panel-servable.ipynb subdir1/subdir2/servable2.ipynb; cp TEST-panel-servable.ipynb TEST-panel-servable-Copy.ipynb
 
-RUN chown jenkins:jenkins -R .
+#RUN chown jenkins:jenkins -R .
 
 # RUN pip install https://github.com/Ouranosinc/xclim/archive/master.tar.gz
 

From c0a31579bfbb4720159d48229d7d0d7d0608f3a1 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Wed, 4 May 2022 14:31:07 -0400
Subject: [PATCH 33/34] docker: remove Holoviz Panel patch, new dev release
 v0.13.1a3 contains it

---
 docker/Dockerfile | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/docker/Dockerfile b/docker/Dockerfile
index e20183e5..02ce8a47 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -106,11 +106,6 @@ ENV BOKEH_ALLOW_WS_ORIGIN "*"
 # the jupyter/base-notebook image also do not default to root user so we do the same here
 USER jenkins
 
-# Patch Panel for "Render with Panel" button regression fix
-# TODO remove this patch once a Panel release contain this PR https://github.com/holoviz/panel/pull/3469.
-RUN wget https://raw.githubusercontent.com/tlvu/panel/ac8d6fb3efdfb66315af1107070a6c67affaebc8/panel/io/jupyter_server_extension.py \
-    -O /opt/conda/envs/birdy/lib/python3.8/site-packages/panel/io/jupyter_server_extension.py
-
 # follow jupyter/base-notebook image so config in jupyterhub is simpler
 # start notebook in conda environment to have working jupyter extensions
 CMD ["conda", "run", "-n", "birdy", "/usr/local/bin/start-notebook.sh"]

From 0977f44a2b88065429b2b55a21890f3a90eb3ad6 Mon Sep 17 00:00:00 2001
From: Long Vu <vu.long@ouranos.ca>
Date: Wed, 4 May 2022 15:00:04 -0400
Subject: [PATCH 34/34] docker: bump panel to devel ver 0.13.1a3 for 'Render
 with Panel' button fix

---
 docker/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docker/environment.yml b/docker/environment.yml
index ce0d4d37..0b342762 100644
--- a/docker/environment.yml
+++ b/docker/environment.yml
@@ -55,7 +55,7 @@ dependencies:
   - jupyter_bokeh
   - pscript
   - h5netcdf
-  - panel >= 0.13.1a2
+  - panel >= 0.13.1a3
   # https://github.com/holoviz/panel
   - pyviz_comms  # (was labextension pyviz/jupyterlab_pyviz in jupyterlab v2)
   - holoviews