convert multiple-sequence-alignments to character-state intersection graphs
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utils
CMakeLists.txt
LICENSE.md
README.md
cut_off.cpp
ma_to_cc.cpp

README.md

phylo_converter

convert multiple-sequence-alignments to character-state intersection graphs

This code converts a multiple alignments, given in fasta format (one line per species) to the corresponding character-state intersection graph.

build requirements: cmake boost gcc

runtime requirements: boost

compile:

  1. cmake . optionally, compile with debug support: cmake -DDEBUG=x where x is the debug level (0 ... 5, where 0 means no debugging output)
  2. make

install: make install

usage: ma_to_cc [output-file] see also ma_to_cc --help