Merge pull request #2 from eernst/patch-1

Support Trinity 2.0.0+ style accessions
PASApipeline · 006bc0767626aa53d9c624faaa5847532da2a762 · brianjohnhaas committed Feb 23, 2015 · Feb 23, 2015 · 006bc07
2 parents 9f73a99 + 4ccd15d
commit 006bc0767626aa53d9c624faaa5847532da2a762
Unified Split

Showing with 4 additions and 0 deletions.

+4 −0 scripts/build_comprehensive_transcriptome.dbi
diff --git a/scripts/build_comprehensive_transcriptome.dbi b/scripts/build_comprehensive_transcriptome.dbi
@@ -351,6 +351,10 @@ sub get_TDN_component {
     elsif ($cdna_acc =~ /^(c\d+_g\d+)/) {
         $component = $1;
     }
+    elsif ($cdna_acc =~ /^(TR\d+\|c\d+_g\d+)/) {
+        # trinity de novo 2.0.0+ style
+        $component = $1;
+    }
     else {
         confess "Error, cannot extract component info from trinity de novo assembly: $cdna_acc";
     }