Explore QTL regions for candidate genes.
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Adding DOI of the manuscript, in which the software was published.
Latest commit 7733f76 May 29, 2014



Author: Pierre-Yves Chibon <pierre-yves.chibon@wur.nl>, <pingou@pingoured.fr>
Author: Richard Finkers <richard.finkers@wur.nl>

Provides biologist a way to mine through their QTL interval for a potential candidate gene using data integration.

The project is published in bioinformatics (http://dx.doi.org/10.1093/bioinformatics/bts298)

Use this project:

A live instance of this project is freely available for Tomato at: http://www.plantbreeding.wur.nl/BreeDB/marker2seq/

If you wish to run your own instance, building instructions are available below.

Get this project:

Source: https://github.com/PBR/Marker2Sequence

Building this project:

This project uses maven to manage its dependencies, you can therefore build the sources using:

mvn clean install

The unit-tests of marker2sequence-lib are off by default. A valid SPARQL endpoint is required to run use these unit tests.

To build the project with the unit-test, you can run:

mvn clean install -DskipTests=false


Marker2Sequence is licensed under the Apache license, V2.0