Reverting reversion of commit 55372bd

Data/DQACatalog/AA-002_invalid_concept_id.csv

@@ -1 +1 @@
-Category Code,PEDSnet_Table,PEDSnet_Field,Lower Threshold,Upper ThresholdAA-002,Person,gender_concept_id,0,0AA-002,Person,race_concept_id,0,0AA-002,Person,ethnicity_concept_id,0,0AA-002,Person,language_concept_id,0,0AA-002,Death,death_type_concept_id,0,0AA-002,Death,death_impute_concept_id,0,0AA-002,Care_Site,place_of_service_concept_id,0,0AA-002,Care_Site,specialty_concept_id,0,0AA-002,Provider,gender_concept_id,0,0AA-002,Provider,specialty_concept_id,0,0AA-002,Visit_Occurrence,visit_concept_id,0,0AA-002,Visit_Occurrence,visit_type_concept_id,0,0AA-002,Condition_Occurrence,condition_type_concept_id,0,0AA-002,Condition_Occurrence,condition_status_concept_id,,AA-002,Procedure_Occurrence,modifier_concept_id,0,0AA-002,Procedure_Occurrence,procedure_type_concept_id,0,0AA-002,Observation,observation_type_concept_id,0,0AA-002,Observation,value_as_concept_id,0,0AA-002,Observation,qualifier_concept_id,0,0AA-002,Observation,unit_concept_id,0,0AA-002,Observation,observation_concept_id,0,0AA-002,Drug_Exposure,drug_type_concept_id,0,0AA-002,Drug_Exposure,route_concept_id,0,0AA-002,Drug_Exposure,dose_unit_concept_id,0,0AA-002,Measurement,measurement_concept_id,0,0AA-002,Measurement,measurement_type_concept_id,0,0AA-002,Measurement,operator_concept_id,0,0AA-002,Measurement,value_as_concept_id,0,0AA-002,Measurement,unit_concept_id,0,0AA-002,Measurement,range_low_operator_concept_id,0,0AA-002,Measurement,range_high_operator_concept_id,0,0AA-002,Measurement,priority_concept_id,0,0AA-002,Fact_relationship,relationship_concept_id,0,0AA-002,Fact_relationship,domain_concept_id_1,0,0AA-002,Fact_relationship,domain_concept_id_2,0,0AA-002,Measurement_organism,organism_concept_id,0,0AA-002,ADT_Occurrence,service_concept_id,0,0AA-002,ADT_Occurrence,adt_type_concept_id,0,0AA-002,Device_Exposure,device_concept_id,0,0AA-002,Device_Exposure,device_type_concept_id,0,0AA-002,Immunization,imm_route_concept_id,0,0AA-002,Immunization,imm_dose_unit_concept_id,0,0
+Category Code,PEDSnet_Table,PEDSnet_Field,Lower Threshold,Upper ThresholdAA-002,Person,gender_concept_id,0,0AA-002,Person,race_concept_id,0,0AA-002,Person,ethnicity_concept_id,0,0AA-002,Person,language_concept_id,0,0AA-002,Death,death_type_concept_id,0,0AA-002,Death,death_impute_concept_id,0,0AA-002,Care_Site,place_of_service_concept_id,0,0AA-002,Care_Site,specialty_concept_id,0,0AA-002,Provider,gender_concept_id,0,0AA-002,Provider,specialty_concept_id,0,0AA-002,Visit_Occurrence,visit_concept_id,0,0AA-002,Visit_Occurrence,visit_type_concept_id,0,0AA-002,Condition_Occurrence,condition_type_concept_id,0,0AA-002,Condition_Occurrence,condition_status_concept_id,0,0AA-002,Condition_Occurrence,poa_concept_id,0,0AA-002,Procedure_Occurrence,modifier_concept_id,0,0AA-002,Procedure_Occurrence,procedure_type_concept_id,0,0AA-002,Observation,observation_type_concept_id,0,0AA-002,Observation,value_as_concept_id,0,0AA-002,Observation,qualifier_concept_id,0,0AA-002,Observation,unit_concept_id,0,0AA-002,Observation,observation_concept_id,0,0AA-002,Drug_Exposure,drug_type_concept_id,0,0AA-002,Drug_Exposure,route_concept_id,0,0AA-002,Drug_Exposure,dose_unit_concept_id,0,0AA-002,Drug_Exposure,dispense_as_written_concept_id,0,0AA-002,Measurement,measurement_concept_id,0,0AA-002,Measurement,measurement_type_concept_id,0,0AA-002,Measurement,operator_concept_id,0,0AA-002,Measurement,value_as_concept_id,0,0AA-002,Measurement,unit_concept_id,0,0AA-002,Measurement,range_low_operator_concept_id,0,0AA-002,Measurement,range_high_operator_concept_id,0,0AA-002,Measurement,priority_concept_id,0,0AA-002,Measurement,specimen_concept_id,0,0AA-002,Fact_relationship,relationship_concept_id,0,0AA-002,Fact_relationship,domain_concept_id_1,0,0AA-002,Fact_relationship,domain_concept_id_2,0,0AA-002,Measurement_organism,organism_concept_id,0,0AA-002,ADT_Occurrence,service_concept_id,0,0AA-002,ADT_Occurrence,adt_type_concept_id,0,0AA-002,Device_Exposure,device_concept_id,0,0AA-002,Device_Exposure,device_type_concept_id,0,0AA-002,Immunization,imm_route_concept_id,0,0AA-002,Immunization,imm_dose_unit_concept_id,0,0AA-002,visit_payer,visit_payer_type_concept_id,0,0

Data/DQACatalog/AA-006_Violate_inclusion_Criteria.csv

@@ -1 +1 @@
-Category Code,PEDSnet_Table,PEDSnet_Field,Lower Threshold,Upper ThresholdAA-006,Person,N/A,0,0
+Category Code,PEDSnet_Table,PEDSnet_Field,Lower Threshold,Upper ThresholdAA-006,Person,N/A,0,0

Data/DQACatalog/AA-010_invalid_format.csv

@@ -1 +1 @@
-Category Code,PEDSnet_Table,PEDSnet_Field,Lower_Threshold,Upper_ThresholdAA-010,Condition_occurrence,condition_source_value,0,0AA-010,Procedure_occurrence,procedure_source_value,0,0AA-010,Immunization,immunization_source_value,0,0
+Category Code,PEDSnet_Table,PEDSnet_Field,Lower_Threshold,Upper_ThresholdAA-010,Condition_occurrence,condition_source_value,0,0AA-010,Procedure_occurrence,procedure_source_value,0,0AA-010,Immunization,immunization_source_value,0,0AA-010,Measurement,specimen_source_value,0,0

Data/DQACatalog/BA-001_Missing_data.csv

@@ -1 +1 @@
-Category Code,PEDSnet_Table,PEDSnet_Field,Lower_Threshold,Upper_ThresholdBA-001,Person,month_of_birth,0,0BA-001,Person,day_of_birth,0,0BA-001,Person,birth_datetime,0,0BA-001,Person,location_id,0,0BA-001,Person,provider_id,0,0BA-001,Person,pn_gestational_age,0,0BA-001,Person,person_source_value,0,0BA-001,Death,cause_concept_id,0,0BA-001,Death,cause_source_value,0,0BA-001,Death,cause_source_concept_id,0,0BA-001,Location,state,0,0BA-001,Location,zip,0,0BA-001,Location,location_source_value,0,0BA-001,Care_Site,place_of_service_concept_id,0,0BA-001,Care_Site,location_id,0,0BA-001,Care_Site,place_of_service_source_value,0,0BA-001,Care_Site,specialty_concept_id,0,0BA-001,Care_Site,specialty_source_value,0,0BA-001,Provider,gender_concept_id,0,0BA-001,Provider,specialty_concept_id,0,0BA-001,Provider,year_of_birth,0,0BA-001,Provider,specialty_source_value,0,0BA-001,Provider,specialty_source_concept_id,0,0BA-001,Provider,gender_source_value,0,0BA-001,Provider,gender_source_concept_id,0,0BA-001,Visit_Occurrence,visit_end_date,0,0BA-001,Visit_Occurrence,visit_end_datetime,0,0BA-001,Visit_Occurrence,provider_id,0,0BA-001,Visit_Occurrence,care_site_id,0,0BA-001,Visit_Occurrence,visit_source_value,0,0BA-001,Visit_Occurrence,visit_source_concept_id,0,0BA-001,Visit_Occurrence,admitting_source_value,0,0BA-001,Visit_Occurrence,admitting_source_concept_id,0,0BA-001,Visit_Occurrence,discharge_to_source_value,0,0BA-001,Visit_Occurrence,discharge_to_concept_id,0,0BA-001,Condition_Occurrence,condition_end_date,0,0BA-001,Condition_Occurrence,condition_end_datetime,0,0BA-001,Condition_Occurrence,stop_reason,0,0BA-001,Condition_Occurrence,provider_id,0,0BA-001,Condition_Occurrence,visit_occurrence_id,0,0BA-001,Condition_Occurrence,condition_source_concept_id,0,0BA-001,Condition_Occurrence,condition_status_concept_id,0,75BA-001,Condition_Occurrence,condition_status_source_value,0,75BA-001,Procedure_Occurrence,modifier_concept_id,0,0BA-001,Procedure_Occurrence,quantity,0,0BA-001,Procedure_Occurrence,provider_id,0,0BA-001,Procedure_Occurrence,visit_occurrence_id,0,0BA-001,Procedure_Occurrence,procedure_source_concept_id,0,0BA-001,Procedure_Occurrence,modifier_source_value,0,0BA-001,Observation,observation_datetime,0,0BA-001,Observation,value_as_number,0,0BA-001,Observation,value_as_string,0,0BA-001,Observation,value_as_concept_id,0,0BA-001,Observation,qualifier_concept_id,0,0BA-001,Observation,unit_concept_id,0,0BA-001,Observation,provider_id,0,0BA-001,Observation,visit_occurrence_id,0,0BA-001,Observation,observation_source_value,0,0BA-001,Observation,observation_source_concept_id,0,0BA-001,Observation,unit_source_value,0,0BA-001,Observation,qualifier_source_value,0,0BA-001,Drug_Exposure,drug_exposure_end_date,0,0BA-001,Drug_Exposure,drug_exposure_order_date,0,0BA-001,Drug_Exposure,drug_exposure_end_datetime,0,0BA-001,Drug_Exposure,drug_exposure_order_datetime,0,0BA-001,Drug_Exposure,stop_reason,0,0BA-001,Drug_Exposure,refills,0,0BA-001,Drug_Exposure,quantity,0,0BA-001,Drug_Exposure,days_supply,0,0BA-001,Drug_Exposure,sig,0,0BA-001,Drug_Exposure,route_concept_id,0,0BA-001,Drug_Exposure,effective_drug_dose,0,0BA-001,Drug_Exposure,eff_drug_dose_source_value,0,0BA-001,Drug_Exposure,dose_unit_concept_id,0,0BA-001,Drug_Exposure,lot_number,0,0BA-001,Drug_Exposure,provider_id,0,0BA-001,Drug_Exposure,visit_occurrence_id,0,0BA-001,Drug_Exposure,drug_source_value,0,0BA-001,Drug_Exposure,drug_source_concept_id,0,0BA-001,Drug_Exposure,route_source_value,0,0BA-001,Drug_Exposure,dose_unit_source_value,0,0BA-001,Drug_Exposure,frequency,0,0BA-001,Measurement,measurement_order_date,0,0BA-001,Measurement,measurement_order_datetime,0,0BA-001,Measurement,measurement_result_date,0,0BA-001,Measurement,measurement_result_datetime,0,0BA-001,Measurement,operator_concept_id,0,0BA-001,Measurement,value_as_number,0,0BA-001,Measurement,value_as_concept_id,0,0BA-001,Measurement,unit_concept_id,0,0BA-001,Measurement,range_low,0,0BA-001,Measurement,range_low_source_value,0,0BA-001,Measurement,range_low_operator_concept_id,0,0BA-001,Measurement,range_high,0,0BA-001,Measurement,range_high_source_value,0,0BA-001,Measurement,range_high_operator_concept_id,0,0BA-001,Measurement,provider_id,0,0BA-001,Measurement,visit_occurrence_id,0,0BA-001,Measurement,measurement_source_concept_id,0,0BA-001,Measurement,unit_source_value,0,0BA-001,Measurement,specimen_source_value,0,0BA-001,Measurement,priority_concept_id,0,0BA-001,Measurement,priority_source_value,0,0BA-001,Visit_Payer,plan_type,0,0BA-001,Measurement_Organism,visit_occurrence_id,0,0BA-001,Measurement_Organism,positivity_datetime,0,0BA-001,ADT_Occurrence,care_site_id,0,0BA-001,ADT_Occurrence,prior_adt_occurrence_id,0,0BA-001,ADT_Occurrence,next_adt_occurrence_id,0,0BA-001,ADT_Occurrence,service_source_value,0,0BA-001,ADT_Occurrence,adt_type_source_value,0,0BA-001,ADT_Occurrence,adt_type_concept_id,0,0BA-001,Device_Exposure,device_source_concept_id,0,0BA-001,Device_Exposure,device_source_value,0,0BA-001,Device_Exposure,device_exposure_end_date,0,0BA-001,Device_Exposure,unique_device_id,0,0BA-001,Device_Exposure,quantity,0,0BA-001,Device_Exposure,provider_id,0,0BA-001,Device_Exposure,visit_occurrence_id,0,0BA-001,Immunization,immunization_source_concept_id,0,0BA-001,Immunization,imm_route_source_value,0,0BA-001,Immunization,imm_route_concept_id,0,0BA-001,Immunization,visit_occurrence_id,0,0BA-001,Immunization,person_id,0,0BA-001,Immunization,provider_id,0,0BA-001,Immunization,immunization_dose,0,0BA-001,Immunization,imm_dose_unit_source_value,0,0BA-001,Immunization,imm_dose_unit_concept_id,0,0BA-001,Immunization,procedure_occurrence_id,0,0
+Category Code,PEDSnet_Table,PEDSnet_Field,Lower_Threshold,Upper_ThresholdBA-001,Person,month_of_birth,0,0BA-001,Person,day_of_birth,0,0BA-001,Person,birth_datetime,0,0BA-001,Person,location_id,0,0BA-001,Person,provider_id,0,0BA-001,Person,pn_gestational_age,0,0BA-001,Person,person_source_value,0,0BA-001,Death,cause_concept_id,0,0BA-001,Death,cause_source_value,0,0BA-001,Death,cause_source_concept_id,0,0BA-001,Location,state,0,0BA-001,Location,zip,0,0BA-001,Location,location_source_value,0,0BA-001,Care_Site,place_of_service_concept_id,0,0BA-001,Care_Site,location_id,0,0BA-001,Care_Site,place_of_service_source_value,0,0BA-001,Care_Site,specialty_concept_id,0,0BA-001,Care_Site,specialty_source_value,0,0BA-001,Provider,gender_concept_id,0,0BA-001,Provider,specialty_concept_id,0,0BA-001,Provider,year_of_birth,0,0BA-001,Provider,specialty_source_value,0,0BA-001,Provider,specialty_source_concept_id,0,0BA-001,Provider,gender_source_value,0,0BA-001,Provider,gender_source_concept_id,0,0BA-001,Visit_Occurrence,visit_end_date,0,0BA-001,Visit_Occurrence,visit_end_datetime,0,0BA-001,Visit_Occurrence,provider_id,0,0BA-001,Visit_Occurrence,care_site_id,0,0BA-001,Visit_Occurrence,visit_source_value,0,0BA-001,Visit_Occurrence,visit_source_concept_id,0,0BA-001,Visit_Occurrence,admitting_source_value,0,0BA-001,Visit_Occurrence,admitting_source_concept_id,0,0BA-001,Visit_Occurrence,discharge_to_source_value,0,0BA-001,Visit_Occurrence,discharge_to_concept_id,0,0BA-001,Condition_Occurrence,condition_end_date,0,0BA-001,Condition_Occurrence,condition_end_datetime,0,0BA-001,Condition_Occurrence,stop_reason,0,0BA-001,Condition_Occurrence,provider_id,0,0BA-001,Condition_Occurrence,visit_occurrence_id,0,0BA-001,Condition_Occurrence,condition_source_concept_id,0,0BA-001,Condition_Occurrence,condition_status_concept_id,0,75BA-001,Condition_Occurrence,condition_status_source_value,0,75BA-001,Condition_Occurrence,poa_concept_id,0,0BA-001,Procedure_Occurrence,modifier_concept_id,0,0BA-001,Procedure_Occurrence,quantity,0,0BA-001,Procedure_Occurrence,provider_id,0,0BA-001,Procedure_Occurrence,visit_occurrence_id,0,0BA-001,Procedure_Occurrence,procedure_source_concept_id,0,0BA-001,Procedure_Occurrence,modifier_source_value,0,0BA-001,Observation,observation_datetime,0,0BA-001,Observation,value_as_number,0,0BA-001,Observation,value_as_string,0,0BA-001,Observation,value_as_concept_id,0,0BA-001,Observation,qualifier_concept_id,0,0BA-001,Observation,unit_concept_id,0,0BA-001,Observation,provider_id,0,0BA-001,Observation,visit_occurrence_id,0,0BA-001,Observation,observation_source_value,0,0BA-001,Observation,observation_source_concept_id,0,0BA-001,Observation,unit_source_value,0,0BA-001,Observation,qualifier_source_value,0,0BA-001,Drug_Exposure,drug_exposure_end_date,0,0BA-001,Drug_Exposure,drug_exposure_order_date,0,0BA-001,Drug_Exposure,drug_exposure_end_datetime,0,0BA-001,Drug_Exposure,drug_exposure_order_datetime,0,0BA-001,Drug_Exposure,stop_reason,0,0BA-001,Drug_Exposure,refills,0,0BA-001,Drug_Exposure,quantity,0,0BA-001,Drug_Exposure,days_supply,0,0BA-001,Drug_Exposure,sig,0,0BA-001,Drug_Exposure,route_concept_id,0,0BA-001,Drug_Exposure,effective_drug_dose,0,0BA-001,Drug_Exposure,eff_drug_dose_source_value,0,0BA-001,Drug_Exposure,dose_unit_concept_id,0,0BA-001,Drug_Exposure,lot_number,0,0BA-001,Drug_Exposure,provider_id,0,0BA-001,Drug_Exposure,visit_occurrence_id,0,0BA-001,Drug_Exposure,drug_source_value,0,0BA-001,Drug_Exposure,drug_source_concept_id,0,0BA-001,Drug_Exposure,route_source_value,0,0BA-001,Drug_Exposure,dose_unit_source_value,0,0BA-001,Drug_Exposure,frequency,0,0BA-001,Drug_Exposure,dispense_as_written_concept_id,0,0BA-001,Measurement,measurement_order_date,0,0BA-001,Measurement,measurement_order_datetime,0,0BA-001,Measurement,measurement_result_date,0,0BA-001,Measurement,measurement_result_datetime,0,0BA-001,Measurement,operator_concept_id,0,0BA-001,Measurement,value_as_number,0,0BA-001,Measurement,value_as_concept_id,0,0BA-001,Measurement,unit_concept_id,0,0BA-001,Measurement,range_low,0,0BA-001,Measurement,range_low_source_value,0,0BA-001,Measurement,range_low_operator_concept_id,0,0BA-001,Measurement,range_high,0,0BA-001,Measurement,range_high_source_value,0,0BA-001,Measurement,range_high_operator_concept_id,0,0BA-001,Measurement,provider_id,0,0BA-001,Measurement,visit_occurrence_id,0,0BA-001,Measurement,measurement_source_concept_id,0,0BA-001,Measurement,unit_source_value,0,0BA-001,Measurement,specimen_source_value,0,0BA-001,Measurement,priority_concept_id,0,0BA-001,Measurement,priority_source_value,0,0BA-001,Measurement,specimen_concept_id,0,0BA-001,Visit_Payer,plan_type,0,0BA-001,Visit_Payer,visit_payer_type_concept_id,0,0BA-001,Measurement_Organism,visit_occurrence_id,0,0BA-001,Measurement_Organism,positivity_datetime,0,0BA-001,ADT_Occurrence,care_site_id,0,0BA-001,ADT_Occurrence,prior_adt_occurrence_id,0,0BA-001,ADT_Occurrence,next_adt_occurrence_id,0,0BA-001,ADT_Occurrence,service_source_value,0,0BA-001,ADT_Occurrence,adt_type_source_value,0,0BA-001,ADT_Occurrence,adt_type_concept_id,0,0BA-001,Device_Exposure,device_source_concept_id,0,0BA-001,Device_Exposure,device_source_value,0,0BA-001,Device_Exposure,device_exposure_end_date,0,0BA-001,Device_Exposure,unique_device_id,0,0BA-001,Device_Exposure,quantity,0,0BA-001,Device_Exposure,provider_id,0,0BA-001,Device_Exposure,visit_occurrence_id,0,0BA-001,Immunization,immunization_source_concept_id,0,0BA-001,Immunization,imm_route_source_value,0,0BA-001,Immunization,imm_route_concept_id,0,0BA-001,Immunization,visit_occurrence_id,0,0BA-001,Immunization,person_id,0,0BA-001,Immunization,provider_id,0,0BA-001,Immunization,immunization_dose,0,0BA-001,Immunization,imm_dose_unit_source_value,0,0BA-001,Immunization,imm_dose_unit_concept_id,0,0BA-001,Immunization,procedure_occurrence_id,0,0

Data/DQACatalog/BA-004_insuff_fact_visits.csv

@@ -1 +1 @@
-Category Code,PEDSnet_Table,PEDSnet_Field,Lower_Threshold,Upper_ThresholdBA-004,Visit_Occurrence,N/A,0,20
+Category Code,PEDSnet_Table,PEDSnet_Field,Lower_Threshold,Upper_ThresholdBA-004,Visit_Occurrence,N/A,0,20

Data/DQACatalog/BA-005_insuff_fact_visit_type.csv

@@ -1 +1 @@
-Category Code,PEDSnet_Table_1,PEDSnet_Field_1,PEDSnet_Table_2,PEDSnet_Field_2,Lower_Threshold,Upper_ThresholdBA-005,Visit_Occurrence,visit_concept_id,Observation,observation_concept_id,0,25BA-005,Visit_Occurrence,visit_concept_id,visit_payer,visit_payer_id,0,10
+Category Code,PEDSnet_Table_1,PEDSnet_Field_1,PEDSnet_Table_2,PEDSnet_Field_2,Lower_Threshold,Upper_ThresholdBA-005,Visit_Occurrence,visit_concept_id,Observation,observation_concept_id,0,25BA-005,Visit_Occurrence,visit_concept_id,visit_payer,visit_payer_id,0,10

Data/DQACatalog/CA-003_Pre_birth_fact.csv

@@ -1 +1 @@
-Category Code,PEDSnet_Table_2,PEDSnet_Field_2,PEDSnet_Table_1,PEDSnet_Field_1,Lower Threshold,Upper ThresholdCA-003,Visit_Occurrence,visit_start_date,Person,birth_datetime,0,0CA-003,Condition_Occurrence,condition_start_date,Person,birth_datetime,0,0CA-003,Procedure_Occurrence,procedure_date,Person,birth_datetime,0,0CA-003,Measurement,measurement_date,Person,birth_datetime,0,0CA-003,Drug_Exposure,drug_exposure_start_date,Person,birth_datetime,0,0
+Category Code,PEDSnet_Table,PEDSnet_Field,Lower Threshold,Upper ThresholdCA-003,Visit_Occurrence,visit_start_date,0,0CA-003,Condition_Occurrence,condition_start_date,0,0CA-003,Procedure_Occurrence,procedure_date,0,0CA-003,Measurement,measurement_date,0,0CA-003,Drug_Exposure,drug_exposure_start_date,0,0