Work with the HMS PGP Surveys (https://my.pgp-hms.org/google_surveys)
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Results
Surveys
.gitignore
LICENSE
README.md

README.md

PDF Export of PGP Survey Questions

Quickstart

Got to the Surveys folder above.

To add a new survey to repository

  • Git clone this repository.
  • Use Google Chrome or Chromium browser. Login to pgp survey google account. Go to https://drive.google.com/drive/#, open the form in question (NOT the google spreadsheet, NOT the "live form"), and go to File>Print. "Save as PDF". The name should be based on the # and the name in https://my.pgp-hms.org/google_surveys. e.g. "[19] PGP Basic Phenotypes Survey 2015 [Form].pdf".
  • Add the file to the /surveys folder
  • In this readme file, update the total number of surveys, then make a new table with the latest number of responses. For help formatting the table, use http://www.tablesgenerator.com/markdown_tables
  • Download the CSV response file and put in the /responses folder
  • Add commit push changes (or fork and submit a pull request).

About

Currently, the Harvard Personal Genome Project website provides a CSV export of the public results for each survey. While these CSVs have headers, the list of possible answers is not available.

As a temporary quickfix, I printed out to PDF the 13 surveys with publicly available results, as a temporary dump of both the survey questions and answer choices. Google Forms has a nice (css? javascript?) ctrl-p function. When you hit "ctrl-p" on the editable version of the form, it prints out a form you could fill out by hand (with all the options expanded).

For the "Participant Survey", which involved extensive dropdown menus (year and country), I printed out two version: one with all the choies (printed from the "editable" page) and one as the participant sees it, with the dropdown minimized (printed from the "submit" page).

I have included a CSV export of the responses as well (the filenames include a timestamp). For the most up-to-date dump of responses, see: https://my.pgp-hms.org/google_surveys

To make it easy to cross-reference the survey questions and the survey responses, I prefixed each file with the "PGP HMS Google Survey" number. These indices can also be found in the URL in the table below. For instance, Blood is marked with [08].

Todo

  • Add these survey questions directly to the Tapestry website (https://my.pgp-hms.org/google_surveys), alongside the responses which are already available on there.
  • Write a google script to allow import and export in something easy to parse (for instance, markdown).
  • Write a script to automate updating of this repository

Info

Reference

Total Number of Surveys: 14

Dump, 2015-07-21

URL # Name Public Link Responses (2015-07-21 22:15:12 UTC) Participants (2015-07-21 22:15:12 UTC)
1 PGP Participant Survey https://my.pgp-hms.org/google_surveys/1 3302 2689
6 PGP Trait & Disease Survey 2012: Cancers https://my.pgp-hms.org/google_surveys/6 1819 1667
7 PGP Trait & Disease Survey 2012: Endocrine, metabolic, nutritional, and immune https://my.pgp-hms.org/google_surveys/7 1763 1616
9 PGP Trait & Disease Survey 2012: Blood https://my.pgp-hms.org/google_surveys/8 1696 1581
9 PGP Trait & Disease Survey 2012: Nervous system https://my.pgp-hms.org/google_surveys/9 1663 1553
10 PGP Trait & Disease Survey 2012: Vision and hearing https://my.pgp-hms.org/google_surveys/10 1717 1625
11 PGP Trait & Disease Survey 2012: Circulatory system https://my.pgp-hms.org/google_surveys/11 1614 1517
12 PGP Trait & Disease Survey 2012: Respiratory system https://my.pgp-hms.org/google_surveys/12 1573 1502
13 PGP Trait & Disease Survey 2012: Digestive system https://my.pgp-hms.org/google_surveys/13 1596 1514
14 PGP Trait & Disease Survey 2012: Genitourinary systems https://my.pgp-hms.org/google_surveys/14 1581 1497
15 PGP Trait & Disease Survey 2012: Skin and subcutaneous tissue https://my.pgp-hms.org/google_surveys/15 1630 1540
16 PGP Trait & Disease Survey 2012: Musculoskeletal system and connective tissue https://my.pgp-hms.org/google_surveys/16 1628 1513
17 PGP Trait & Disease Survey 2012: Congenital traits and anomalies https://my.pgp-hms.org/google_surveys/17 1693 1568

Dump, 2015-09-03 20:46:23 UTC

URL # Name Public Link Responses Participants
19 PGP Basic Phenotypes Survey 2015 https://my.pgp-hms.org/google_surveys/19 259 255

Contact

Nancy Ouyang (nancy@curoverse.com)

Export Date

July 21, 2015.

License

CC0 1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/

Thanks

Thanks to www.tablesgenerator.com/markdown_tables, which I used to create tables in markdown (copy-pasting out of google docs).