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README.md

LIQUID

LIQUID is a software tool for identifying lipids in LC-MS/MS-based lipidomics data. It is described in publication LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data (doi: 10.1093/bioinformatics/btx046)

Overview

LIQUID provides users with the capability to process high throughput data and contains a customizable target library and scoring model per project needs. The graphical user interface provides visualization of multiple lines of spectral evidence for each lipid identification, allowing rapid examination of data for making confident identifications of lipid molecular species.

Requirements

Downloads

Download a .zip file with LIQUID.exe from the releases page:

Usage

Instructions for use are described in LIQUID_installation_operation.pdf

Target libraries are available at https://github.com/PNNL-Comp-Mass-Spec/LIQUID/tree/master/TargetDatabase
(and are also included in the .zip file attached to each Release)

Contacts

Written by Kevin Crowell and Jennifer Kyle for the Department of Energy (PNNL, Richland, WA)
E-mail: proteomics@pnnl.gov
Website: https://panomics.pnl.gov/ or https://omics.pnl.gov

License

LIQUID is licensed under the Apache License, Version 2.0; you may not use this file except in compliance with the License. You may obtain a copy of the License at https://opensource.org/licenses/Apache-2.0

RawFileReader reading tool. Copyright © 2016 by Thermo Fisher Scientific, Inc. All rights reserved.

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Software tool for identifying lipids in LC-MS/MS-based lipidomics data

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