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HG002 Structural Variant Analysis with CLR data

tkerelska edited this page Apr 19, 2019 · 3 revisions

SAMPLE

GIAB HG002 extracted DNA

METHODS

  • Shearing 75 kb with Megaruptor
  • Library prep SMRTbell Express 2.0
  • Size selection >30 kb with BluePippin
  • Sequencing Sequel II System with "Early Access" binding kit (101-490-800) and chemistry (101-490-900)
  • Run time 15 hrs per SMRT Cell
  • Reference hs37d5 (GRCh37 with decoy)
  • Variant Calling Structural Variant Calling analysis in SMRT Link 6.1

DOWNLOAD

URLs and md5 checksums are listed in URLs.txt

Download Data: https://downloads.pacbcloud.com/public/dataset/SV-HG002-CLR/

Download from China: https://downloads-ap.pacbcloud.com/public/dataset/SV-HG002-CLR/

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