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This repository has been archived by the owner on Mar 16, 2022. It is now read-only.

PacificBiosciences/FALCON-pbsmrtpipe

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FALCON using pbsmrtpipe for workflow

pbsmrtpipe would be used to run the tasks and to update the tool-contracts, but otherwise it is not really needed here.

Utilities

canonical.py

This is for making our *.json files consistent. They are stored in package pbsmrtpipe.

pb-ini2xml

This converts our config files to a section of a preset.xml file.

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run.py etc using pbsmrtpipe instead of pypeFLOW

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