Minor Variant Calling and Phasing Tools
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README.md

README.md

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MinorSeq

Minor Variant Calling and Phasing Tools


Availability

Latest version can be installed via bioconda package minorseq.

Please refer to our official pbbioconda page for information on Installation, Support, License, Copyright, and Disclaimer.

Quick Tools Overview

End-to-end workflow

Overview how to run your sample.

Minor variant caller

juliet identifies minor variants from aligned ccs reads.

Reduce alignment

fuse reduces an alignment into its closest representative sequence.

Swap BAM reference

cleric swaps the reference of an alignment by transitive alignment.

Minor variant pipeline

julietflow automatizes the minor variant pipeline.

Mix Data In-Silico

mixdata helps to mix clonal strains in-silico for benchmarking studies.

Disclaimer

THIS WEBSITE AND CONTENT AND ALL SITE-RELATED SERVICES, INCLUDING ANY DATA, ARE PROVIDED "AS IS," WITH ALL FAULTS, WITH NO REPRESENTATIONS OR WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, SATISFACTORY QUALITY, NON-INFRINGEMENT OR FITNESS FOR A PARTICULAR PURPOSE. YOU ASSUME TOTAL RESPONSIBILITY AND RISK FOR YOUR USE OF THIS SITE, ALL SITE-RELATED SERVICES, AND ANY THIRD PARTY WEBSITES OR APPLICATIONS. NO ORAL OR WRITTEN INFORMATION OR ADVICE SHALL CREATE A WARRANTY OF ANY KIND. ANY REFERENCES TO SPECIFIC PRODUCTS OR SERVICES ON THE WEBSITES DO NOT CONSTITUTE OR IMPLY A RECOMMENDATION OR ENDORSEMENT BY PACIFIC BIOSCIENCES.