Permalink
Switch branches/tags
Nothing to show
Commits on Oct 17, 2011
  1. Added functionality to automatically set up the NCBI taxonomy DB

    Philipp Comans
    Philipp Comans committed Oct 17, 2011
    Works only for MySQL right now
  2. Added functionality to automatically set up the NCBI taxonomy DB

    Philipp Comans
    Philipp Comans committed Oct 17, 2011
    Works only for MySQL right now
Commits on Oct 16, 2011
  1. Updated gemspecs

    Philipp Comans
    Philipp Comans committed Oct 16, 2011
Commits on Oct 15, 2011
  1. Test with medium sized input files

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
  2. A smarter way to get id from name: the name does not have to be a sci…

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
    …entific name, but if multiple results are returned, prefer the scientific name.
  3. Accidentally called id_from_gi instead of name_from_gi

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
  4. Test with medium sized input files

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
  5. Fixed a crash when a GI is not found

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
  6. Use caching to make the script run twice as fast (1127.861 secs -> 54…

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
    …6.458 secs)
  7. Use Trollop for command line argument parsing

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
  8. Use the NCBI taxonomy database for gi to taxonomy id lookup instead o…

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
    …f the NCBI REST API
  9. Removed unused file

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
  10. Use Trollop for command line argument parsing

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
  11. Use the NCBI taxonomy database for gi to taxonomy id lookup instead o…

    Philipp Comans
    Philipp Comans committed Oct 15, 2011
    …f the NCBI REST API
Commits on Oct 14, 2011
  1. Replaced synonym Fungi/Metazoa incertae sedis by scientific name Opis…

    Philipp Comans
    Philipp Comans committed Oct 14, 2011
    …thokonta incertae sedis
Commits on Oct 13, 2011
  1. Typo, better link

    Philipp Comans
    Philipp Comans committed Oct 13, 2011
  2. Fixed links

    Philipp Comans
    Philipp Comans committed Oct 13, 2011
  3. Added a preliminary Readme file

    Philipp Comans
    Philipp Comans committed Oct 13, 2011
  4. Revert "Revert "Added TODOs""

    Philipp Comans
    Philipp Comans committed Oct 13, 2011
    This reverts commit fb496af.
  5. Revert "Added TODOs"

    Philipp Comans
    Philipp Comans committed Oct 13, 2011
    This reverts commit bdb8488.
  6. Added TODOs

    Philipp Comans
    Philipp Comans committed Oct 13, 2011
  7. Added TODOs

    Philipp Comans
    Philipp Comans committed Oct 13, 2011
  8. Method stubs

    Philipp Comans
    Philipp Comans committed Oct 13, 2011
Commits on Oct 11, 2011
  1. Removed unused file

    Philipp Comans
    Philipp Comans committed Oct 11, 2011
Commits on Oct 10, 2011
  1. Improved tests for KingdomDB

    Philipp Comans
    Philipp Comans committed Oct 10, 2011
  2. Let's keep this file around for reference

    Philipp Comans
    Philipp Comans committed Oct 10, 2011
  3. Using a setup method for testing

    Philipp Comans
    Philipp Comans committed Oct 10, 2011
Commits on Oct 9, 2011
  1. Fixed typo

    Philipp Comans
    Philipp Comans committed Oct 9, 2011
Commits on Apr 21, 2011
  1. Bump to version 0.0.4

    Philipp Comans
    Philipp Comans committed Apr 21, 2011
  2. Caching NCBI results

    Philipp Comans
    Philipp Comans committed Apr 21, 2011
  3. Better Regexps

    Philipp Comans
    Philipp Comans committed Apr 21, 2011
  4. Truncate sequence names in terminal output

    Philipp Comans
    Philipp Comans committed Apr 21, 2011
Commits on Apr 20, 2011
  1. More information in the gemspec

    Philipp Comans
    Philipp Comans committed Apr 20, 2011
Commits on Apr 19, 2011
  1. Do not commit testing output

    Philipp Comans
    Philipp Comans committed Apr 19, 2011