Skip to content
master
Switch branches/tags
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 

OpenContami

Open Cell Microbial Contaminants by High-throughput Sequencing

The quality assurance is becoming an increasingly important issue in various research settings. NGS (next-generation sequencing)-based contaminant detections offer promising diagnostics to assess the presence of contaminants. Because biological resources are frequently contaminated by multiple microorganisms, researchers need careful attention to intra- and interspecies sequence similarities. OpenContami (https://openlooper.hgc.jp/opencontami/) investigates the origin of sequenced reads from user-uploaded BAM files and provides highly probable microbial contaminants present in the BAM files that may be contaminated by the laboratory reagents, sequencer carryovers, cross-contamination, etc.

About

Open Cell Microbial Contaminants by High-throughput Sequencing

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published