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Welcome to the mptp wiki! You will find here more documentation material regarding mptp. Including theoretical background, use cases, option and output explanation.

Theoretical aspects of PTP

mptp command-line options reference

Contact information and support

Beginner's guide to mptp

• Input data
  • Input tree
  • Estimation of minimum branch length
  • Outgroup
• Maximum likelihood delimitation
  • Overview of Command-line Parameters
  • Command line examples
  • Output files
• Markov-Chain Monte-Carlo
  • Overview of Command-line Parameters
  • Command line examples
  • Output files
  • Support values and credible intervals
    • Average Support Values (ASV)
    • Average Standard Deviation of Delmitation Support Values (ASDDSV)
    • Credible Intervals
  • Examples of convergence

(m)PTP Tutorial