Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
Java

README.md

ChiBE: Chisio BioPAX Editor

Chisio BioPAX Editor, or simply ChiBE, is a free editing and visualization tool for pathway models represented by the BioPAX format, using SBGN Process Description Language, based on Chisio.

See the wiki for more information.

Credits

IntelliJ IDEA

Publications

Babur, Ö., Dogrusoz, U., Çakir, M., Aksoy, B. A., Schultz, N., Sander, C., & Demir, E. (2014). Integrating biological pathways and genomic profiles with ChiBE 2. BMC genomics, 15(1), 642.

Babur, O., Dogrusoz, U., Demir, E., & Sander, C. (2010). ChiBE: interactive visualization and manipulation of BioPAX pathway models. Bioinformatics, 26(3), 429-431.