Gear Name: fw-heudiconv, Gear Version: 0.2.4_0.1.9 Gear starting... /flywheel/v0/fw_heudiconv/query.py:4: UserWarning: The DICOM readers are highly experimental, unstable, and only work for Siemens time-series at the moment Please use with caution. We would be grateful for your help in improving them from nibabel.nicom.dicomwrappers import wrapper_from_data INFO: ==============: fw-heudiconv gear manager starting up :=============== INFO: Calling fw-heudiconv with the following settings: INFO: Project: olfnav INFO: Subject(s): ['may'] INFO: Session(s): ['01'] INFO: Heuristic: /flywheel/v0/input/heuristic/OlfNavHeuristicK.py INFO: Action: Curate INFO: Dry run: False /usr/local/lib/python3.7/site-packages/fw_heudiconv/query.py:4: UserWarning: The DICOM readers are highly experimental, unstable, and only work for Siemens time-series at the moment Please use with caution. We would be grateful for your help in improving them from nibabel.nicom.dicomwrappers import wrapper_from_data INFO: =================: fw-heudiconv curator starting up :================= INFO: Loading heuristic file... INFO: Querying Flywheel server... DEBUG: Found project: olfnav (5d4dca37c3758a0045d81fa5) DEBUG: Found sessions: 01 (5d93927da54d350028b0098c) INFO: Applying heuristic to 01 (1/1)... DEBUG: Found SeqInfos: Localizer: [TR=0.0086 TE=0.004 shape=(512, 512, 3, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')] (5d93927da54d350028b0098d) Localizer: [TR=0.0086 TE=0.004 shape=(512, 512, 3, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')] (5d93927da54d350028b0098d) Localizer: [TR=0.0086 TE=0.004 shape=(512, 512, 3, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')] (5d93927da54d350028b0098d) MPRAGE_P2_1mm: [TR=2.2 TE=0.00467 shape=(256, 192, 160, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')] (5d939292a54d350042b3c1cf) 1_BOLD_2mm_TE22_TR2000_MB2: [TR=2 TE=0.022 shape=(832, 832, 130, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')] (5d9392b8a54d350040b2d83f) 2_BOLD_2mm_TE22_TR2000_MB2: [TR=2 TE=0.022 shape=(832, 832, 130, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')] (5d9392e0a54d350044b4c2a3) 3_BOLD_2mm_TE22_TR2000_MB2: [TR=2 TE=0.022 shape=(832, 832, 130, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')] (5d939307a54d350042b3c1d2) 4_BOLD_2mm_TE22_TR2000_MB2: [TR=2 TE=0.022 shape=(832, 832, 130, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')] (5d93932ea54d350042b3c1d4) 5_BOLD_2mm_TE22_TR2000_MB2: [TR=2 TE=0.022 shape=(832, 832, 130, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')] (5d939356a54d350040b2d843) 6_BOLD_2mm_TE22_TR2000_MB2: [TR=2 TE=0.022 shape=(832, 832, 130, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')] (5d93937ca54d350038b0f5aa) 7_BOLD_2mm_TE22_TR2000_MB2: [TR=2 TE=0.022 shape=(832, 832, 130, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')] (5d9393a8a54d350042b3c1d9) 8_BOLD_2mm_TE22_TR2000_MB2: [TR=2 TE=0.022 shape=(832, 832, 130, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')] (5d9393cfa54d35003eb23f68) BOLD_wholebrain_singlerep: [TR=2 TE=0.022 shape=(936, 936, 1, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')] (5d9393d6a54d35003eb23f6a) B0map: [TR=0.58 TE=0.00658 shape=(80, 80, 120, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')] (5d9393faa54d350044b4c2a5) B0map: [TR=0.58 TE=0.00412 shape=(80, 80, 120, -1) image_type=('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')] (5d9393faa54d350044b4c2a5) B0map: [TR=0.58 TE=0.00658 shape=(80, 80, 60, -1) image_type=('ORIGINAL', 'PRIMARY', 'P', 'ND')] (5d939409a54d350040b2d848) INFO: Processing IntendedFor fields based on heuristic file DEBUG: Intention map: [('sub-{subject}/ses-{session}/fmap/sub-{subject}_ses-{session}_phasediff', ['sub-{subject}/ses-{session}/func/sub-{subject}_ses-{session}_task-olfnav_run-01_bold.nii.gz', 'sub-{subject}/ses-{session}/func/sub-{subject}_ses-{session}_task-olfnav_run-02_bold.nii.gz', 'sub-{subject}/ses-{session}/func/sub-{subject}_ses-{session}_task-olfnav_run-03_bold.nii.gz', 'sub-{subject}/ses-{session}/func/sub-{subject}_ses-{session}_task-olfnav_run-04_bold.nii.gz', 'sub-{subject}/ses-{session}/func/sub-{subject}_ses-{session}_task-olfnav_run-05_bold.nii.gz', 'sub-{subject}/ses-{session}/func/sub-{subject}_ses-{session}_task-olfnav_run-06_bold.nii.gz', 'sub-{subject}/ses-{session}/func/sub-{subject}_ses-{session}_task-olfnav_run-07_bold.nii.gz', 'sub-{subject}/ses-{session}/func/sub-{subject}_ses-{session}_task-olfnav_run-08_bold.nii.gz', 'sub-{subject}/ses-{session}/func/sub-{subject}_ses-{session}_task-wb_bold.nii.gz'])] INFO: Processing Medatata fields based on heuristic file DEBUG: Metadata extras: defaultdict(, {('sub-{subject}/ses-{session}/fmap/sub-{subject}_ses-{session}_phasediff', ('nii.gz',), None): {'EchoTime1': 0.00412, 'EchoTime2': 0.00658}}) INFO: Applying changes to files... DEBUG: 1.3.12.2.1107.5.2.43.167024.2019100112560284711482007.0.0.0.nii.gz sub-may_ses-01_T1w.nii.gz -> sub-may/ses-01/anat/sub-may_ses-01_T1w.nii.gz DEBUG: 1.3.12.2.1107.5.2.43.167024.2019100113435110444167920.0.0.0_e2_ph.nii.gz sub-may_ses-01_phasediff.nii.gz -> sub-may/ses-01/fmap/sub-may_ses-01_phasediff.nii.gz DEBUG: 'sub-may_ses-01_phasediff.nii.gz' IntendedFor: ['sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-01_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-02_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-03_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-04_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-05_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-06_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-07_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-08_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-wb_bold.nii.gz'] DEBUG: Applied! DEBUG: 1.3.12.2.1107.5.2.43.167024.2019100113435110444167920.0.0.0_e2_ph.nii.gz metadata: {'EchoTime1': 0.00412, 'EchoTime2': 0.00658} DEBUG: 1.3.12.2.1107.5.2.43.167024.2019100113435110442867919.0.0.0_e1.nii.gz sub-may_ses-01_magnitude1.nii.gz -> sub-may/ses-01/fmap/sub-may_ses-01_magnitude1.nii.gz DEBUG: 1.3.12.2.1107.5.2.43.167024.2019100113435110442867919.0.0.0_e2.nii.gz sub-may_ses-01_magnitude2.nii.gz -> sub-may/ses-01/fmap/sub-may_ses-01_magnitude2.nii.gz DEBUG: Ensuring all intentions apply for acquisition B0map2: 1.3.12.2.1107.5.2.43.167024.2019100113435110444167920.0.0.0_e2_ph.nii.gz WARNING: IntendedFor values do not point to a BIDS file: ['sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-01_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-02_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-03_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-04_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-05_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-06_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-07_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-olfnav_run-08_bold.nii.gz', 'sub-may/ses-01/func/sub-may_ses-01_task-wb_bold.nii.gz'] INFO: Done! INFO: ===================: Exiting fw-heudiconv curator :=================== INFO: Done! INFO: ================: Exiting fw-heudiconv gear manager :================= Gear completed successfully after running for 15.411s. Uploading results... Job complete.