Run the following in the directory that contains the docker-compose.yml file:
docker-compose up
You must deliberately apply existing migrations:
docker-compose exec manage_db alembic upgrade head
The schema is defined using SQLAlchemy in the dbschema/models.py file. You can edit this file to
describe the new database structure you want.
First make sure that all current migrations have been applied:
docker-compose exec manage_db alembic upgrade head
(You can alternatively just run the ./utils/apply_migrations.sh script which does the same thing)
Then generate the revision to upgrade to the new schema defined in models.py:
docker-compose exec manage_db alembic revision --autogenerate
Finally, apply migrations again to upgrade to the latest revision:
docker-compose exec manage_db alembic upgrade head
If you want this revision to be permanent and available to others, please
remember to git add it to the repo. It will be found in the dbschema/migrations/versions/
directory. Use git status to see which files in there are new.
You can use the running manage_db container to execute other checks on the
postgres db. For example, you can print out the database metadata:
docker-compose exec manage_db python3 print_schema.py
Currently this is handled by running a script in the onboarding/ dir of the virtual-coach-server repo. See the README there for instructions on using it.
Important: The database docker-compose must be up and running with all migrations applied, as described above, BEFORE running any of the following steps.
Once the db is up and running, you can use:
python helper/populate_db.py
to populate the database with sample user data.
NB: The database will use the environment variable specified in the docker-compose file:
- DATABASE_URL = the endpoint of the database (default: postgresql+psycopg2://root:root@db/perfectfit)
- TEST_USER_ID = the user id that will be used to populate the data (default: 41482)
When you updated the db models, you must also update the helper/populate_db.py script
to match the new schema.
NB: Follow these steps to repopulate a fresh database:
- Stop the running containers:
docker-compose down - Run containers:
docker-compose up - Apply migrations:
./utils/apply_migrations.sh - Populate database:
python helper/populate_db.py
./utils/print_all_users.sh will print out all the info currently stored in the (running) db's USERS table.
For development purposes, you can install this python package using pip, from the repo root directory:
pip install .
Note: Do not use development mode (i.e. pip install -e .) as it does not resolve the namespace correctly and you will get errors like ModuleNotFoundError: No module named 'virtual_coach_db'.
Alternatively, if you just want to use it (e.g. in a Dockerfile) then add it to your requirements.txt using the most updated version:
git+https://github.com/PerfectFit-project/virtual-coach-db#v0.1.0
Note that when installing it in a Dockerfile on Windows, you may need to install further requirements to be able to install the required psycopg2 package in the Dockerfile (e.g. libpq-dev). Also note that if your database runs on localhost, the database cannot be reached via localhost from inside a Docker container on Windows. Use host.docker.internal from inside a Docker container to connect to the database on localhost instead.
When a new version of the niceday_client package is ready and tested, a new relase has to be created together with release notes. The release name has to follow the semantic versioning convention.
Albers, N., Neerincx, M. A., Penfornis, K. M., & Brinkman, W. P. (2022). Users’ needs for a digital smoking cessation application and how to address them: A mixed-methods study. PeerJ, 10, e13824.
De StopCoach (https://www.trimbos.nl/aanbod/interventies/de-stopcoach/).
Michie, S., Ashford, S., Sniehotta, FalkoF., Dombrowski, StephanU., Bishop, A., & French, DavidP. (2011). A refined taxonomy of behaviour change techniques to help people change their physical activity and healthy eating behaviours: The CALO-RE taxonomy. Psychology & Health, 26(11), 1479–1498. https://doi.org/10.1080/08870446.2010.540664
Michie, S., Brown, J., Geraghty, A. W., Miller, S., Yardley, L., Gardner, B., ... & West, R. (2012). Development of StopAdvisor: a theory-based interactive internet-based smoking cessation intervention. Translational behavioral medicine, 2(3), 263-275.
https://www.cdc.gov/tobacco/campaign/tips/quit-smoking/7-common-withdrawal-symptoms/index.html
https://exerciseright.com.au/body-reacts-to-exercise/
https://www.ikstopnu.nl/bibliotheek/roken-en-stress/#ik-wil-stoppen-met-roken
https://www.jellinek.nl/vraag-antwoord/wat-zijn-de-effecten-van-nicotine/
https://jongvolwassenen.ikstopnu.nl/roken-en-stress/roken-om-stress-te-verminderen-werkt-averechts/
https://www.nuffieldhealth.com/article/what-are-the-effects-of-exercise-over-time
https://shapescale.com/blog/fitness/exercising/how-your-body-changes-once-you-start-exercising/
https://www.stichtingstopbewust.nl/stoppen-met-roken-conditie/
https://apps.who.int/iris/bitstream/handle/10665/337001/9789240014886-eng.pdf
https://www.who.int/news-room/fact-sheets/detail/physical-activity
https://www.youtube.com/watch?v=RAfoWVy6XhM
Bjørngaard, J. H., Nordestgaard, A. T., Taylor, A. E., Treur, J. L., Gabrielsen, M. E., Munafo, M. R., ... & Davey Smith, G. (2017). Heavier smoking increases coffee consumption: findings from a Mendelian randomization analysis. International journal of epidemiology, 46(6), 1958-1967.
Caddick, Z. A., Gregory, K., Arsintescu, L., & Flynn-Evans, E. E. (2018). A review of the environmental parameters necessary for an optimal sleep environment. Building and environment, 132, 11-20.
Chellappa, S. L., Steiner, R., Oelhafen, P., Lang, D., Götz, T., Krebs, J., & Cajochen, C. (2013). Acute exposure to evening blue-enriched light impacts on human sleep. Journal of sleep research, 22(5), 573-580.
Grgic, J., Grgic, I., Pickering, C., Schoenfeld, B. J., Bishop, D. J., & Pedisic, Z. (2020). Wake up and smell the coffee: caffeine supplementation and exercise performance—an umbrella review of 21 published meta-analyses. British journal of sports medicine, 54(11), 681-688.
Hughes, J. R., & Kalman, D. (2006). Do smokers with alcohol problems have more difficulty quitting?. Drug and alcohol dependence, 82(2), 91-102.
Jaehne, A., Loessl, B., Bárkai, Z., Riemann, D., & Hornyak, M. (2009). Effects of nicotine on sleep during consumption, withdrawal and replacement therapy. Sleep medicine reviews, 13(5), 363-377.
King, A. C., Pruitt, L. A., Woo, S., Castro, C. M., Ahn, D. K., Vitiello, M. V., ... & Bliwise, D. L. (2008). Effects of moderate-intensity exercise on polysomnographic and subjective sleep quality in older adults with mild to moderate sleep complaints. The Journals of Gerontology Series A: Biological Sciences and Medical Sciences, 63(9), 997-1004.
Martins, G. L., Guilherme, J. P. L. F., Ferreira, L. H. B., de Souza-Junior, T. P., & Lancha Jr, A. H. (2020). Caffeine and exercise performance: possible directions for definitive findings. Frontiers in sports and active living, 202.
Prosise, G. L., Bonnet, M. H., Berry, R. B., & Dickel, M. J. (1994). Effects of abstinence from smoking on sleep and daytime sleepiness. Chest, 105(4), 1136-1141.
Swanson, J. A., Lee, J. W., Hopp, J. W., & Berk, L. S. (1997). The impact of caffeine use on tobacco cessation and withdrawal. Addictive behaviors, 22(1), 55-68.
Thomas, D. T., Erdman, K. A., & Burke, L. M. (2016). Nutrition and athletic performance. Med Sci Sports Exerc, 48(3), 543-568.
https://www.stichtingstopbewust.nl/
Johnson, Adrienne L., Tanya R. Schlam, Timothy B. Baker, and Megan E. Piper. "Understanding What Changes Adults in a Smoking Cessation Study Believe They Need to Make to Quit Smoking: A Qualitative Analysis of Pre- and Post-Quit Perceptions." Psychology of Addictive Behaviors, June 23, 2022. https://doi.org/10.1037/adb0000856.
Knowles, Ruth Dailey. Positive Self-Talk. AJN, American Journal of Nursing 81(3):p 535, March 1981.
Lunenburg, F. C. (2011). Goal-setting theory of motivation. International journal of management, business, and administration, 15(1), 1-6.
McCaul, K. D., Hockemeyer, J. R., Johnson, R. J., Zetocha, K., Quinlan, K., & Glasgow, R. E. (2006). Motivation to quit using cigarettes: a review. Addictive behaviors, 31(1), 42-56.
Meijer, E., Gebhardt, W. A., van Laar, C., van den Putte, B., & Evers, A. W. (2018). Strengthening quitter self-identity: An experimental study. Psychology & health, 33(10), 1229-1250.
Priebe, C. S., Atkinson, J., & Faulkner, G. (2017). Run to Quit: An evaluation of a scalable physical activity-based smoking cessation intervention. Mental Health and Physical Activity, 13, 15-21
Sejati, A., & Djanah, S. N. (2020, February). Literature Review Study: Supporting and Inhibiting Factors of the Success to Stop Smoking. In 4th International Symposium on Health Research (ISHR 2019) (pp. 18-23). Atlantis Press.
https://www.kenniscentrumsportenbewegen.nl/producten/beweegrichtlijnen/
https://www.nhs.uk/live-well/exercise/exercise-health-benefits/
https://sport.nl/sportclub-overzichtspagina
https://www.supportervanallehardlopers.nl/hardlooproute-planner/start/
Cropley, M., Ussher, M., & Charitou, E. (2007). Acute effects of a guided relaxation routine (body scan) on tobacco withdrawal symptoms and cravings in abstinent smokers. Addiction, 102(6), 989-993.
Dickson-Spillmann, M., Haug, S., & Schaub, M. P. (2013). Group hypnosis vs. relaxation for smoking cessation in adults: a cluster-randomised controlled trial. BMC Public Health, 13, 1-9.
Gardner, B., Smith, L., Lorencatto, F., Hamer, M., & Biddle, S. J. (2016). How to reduce sitting time? A review of behaviour change strategies used in sedentary behaviour reduction interventions among adults. Health psychology review, 10(1), 89-112.
Hagger, M. S. (2019). Habit and physical activity: Theoretical advances, practical implications, and agenda for future research. Psychology of Sport and Exercise, 42, 118-129.
Holden, S. S., Zlatevska, N., & Dubelaar, C. (2016). Whether smaller plates reduce consumption depends on who’s serving and who’s looking: a meta-analysis. Journal of the Association for Consumer Research, 1(1), 134-146.
Limsanon, T., & Kalayasiri, R. (2015). Preliminary effects of progressive muscle relaxation on cigarette craving and withdrawal symptoms in experienced smokers in acute cigarette abstinence: a randomized controlled trial. Behavior Therapy, 46(2), 166-176.
Shahab, L., Sarkar, B. K., & West, R. (2013). The acute effects of yogic breathing exercises on craving and withdrawal symptoms in abstaining smokers. Psychopharmacology, 225, 875-882.
https://positivepsychology.com/journaling-for-mindfulness/
Seligman, M. E., Steen, T. A., Park, N., & Peterson, C. (2005). Positive psychology progress: empirical validation of interventions. American psychologist, 60(5), 410.
https://www.ikstopnu.nl/motivatie/5x-een-mooier-uiterlijk/#handen
https://www.rokeninfo.nl/hulp/stoppen-roken-vrienden
https://www.stichtingstopbewust.nl/stoppen-met-roken-gevolgen-uiterlijk/
Mercken, L., Candel, M., Van Osch, L., & de Vries, H. (2011). No smoke without fire: The impact of future friends on adolescent smoking behaviour. British journal of health psychology, 16(1), 170-188.
Albers, N., Hizli, B., Scheltinga, B. L., Meijer, E., & Brinkman, W. P. (2023). Setting physical activity goals with a virtual coach: vicarious experiences, personalization and acceptance. Journal of Medical Systems, 47(1), 15.
Hizli, B., Albers, N., & Brinkman, W.-P. (2022). Data and code underlying the master thesis: Goal-setting dialogue for physical activity with a virtual coach (Version 1) [Data set]. 4TU.ResearchData. https://doi.org/10.4121/20047328.V1