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NOTE: There are now better tools available to do this conversion process, such as vcfutils ucscsnp2vcf in the SAMtools package and VariantsToVCF function in the Genome Analysis Toolkit (GATK), and I recommend these tools over dbSNP2vcf.pl.

dbSNP2vcf.pl is a (simplistic) Perl script to convert a dbSNP flat database into a tabix-ed bgzip-ed vcf file. This is useful for generating VCF files for non-human organisms to use in conjunction with, for example, GATK (http://www.broadinstitute.org/gatk/).

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A (simplistic) Perl script to create a VCF file from a dbSNP flat database.

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