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Updates for stst3: added directory, added stst3.in to dist, remark in…

… MANUAL. Remark about autotools in README.md
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John Donners
John Donners committed Jan 6, 2016
1 parent 94333ab commit 466696f335604411d8ba3c806e92f2d8a33e8e17
Showing with 11 additions and 2 deletions.
  1. +1 −0 MANUAL.md
  2. +1 −1 Makefile.am
  3. +9 −1 README.md
  4. 0 stst3/.gitignore
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@@ -94,5 +94,6 @@ DTMAX : Maximum time step for variable time stepping
VLIM : Maximum allowable local velocity in simulation
SLABDUMP(STST3) : Output wall normal slabs at locations specified in stst3.in
If this option is active, you need to create a directory named 'stst3'
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
```
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@@ -14,7 +14,7 @@ CreateInitialConditions.F90 GlobalQuantities.F90 InitTimeMarchScheme.F90
afid_LDADD = $(FFTW3_LIBS) $(LAPACK_LIBS) $(BLAS_LIBS) $(HDF5_LIBS)
EXTRA_DIST = bou.in transpose_z_to_x.F90 transpose_x_to_z.F90 transpose_x_to_y.F90 transpose_y_to_x.F90 transpose_y_to_z.F90 transpose_z_to_y.F90 factor.F90 halo.F90 fft_common.F90 alloc.F90 halo_common.F90 Example
EXTRA_DIST = bou.in transpose_z_to_x.F90 transpose_x_to_z.F90 transpose_x_to_y.F90 transpose_y_to_x.F90 transpose_y_to_z.F90 transpose_z_to_y.F90 factor.F90 halo.F90 fft_common.F90 alloc.F90 halo_common.F90 Example stst3 stst3.in
# Change preprocessor flag. This is specific to some Fortran compilers.
# This hack shouldn't be used if C/C++ code is included!
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@@ -19,7 +19,8 @@ The AFiD model has the following prerequisites:
* FFTW3
* HDF5 with parallel I/O
To install AFiD, please use the 'configure' script. Note that you'll need to set optimization and debugging options yourself.
It's recommended to download a release tarball of AFiD. To install AFiD, please use the 'configure' script.
Note that you'll need to set optimization and debugging options yourself.
A good, first guess at the configuration of AFiD would be
```
@@ -53,6 +54,13 @@ to configure the HDF5 library. You can override these using:
It is recommended to use the vendor-optimized libraries for BLAS and (possibly) LAPACK (e.g. MKL, ESSL or LibSci).
Note that the FFTW3 library cannot be replaced with the MKL library, since it doesn't support the calls that are used in AFiD.
Should you want to build from the repository, you'll need recent versions of the GNU autotools as well.
You can create the configure script from the repository with the command
```
autoreconf
```
Usage
-----
See the [manual](MANUAL.md) for more information
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