From 2fb0e4578f5fe0e849653d34c32d20b14d375615 Mon Sep 17 00:00:00 2001
From: PingjunChen <chenpingjun@gmx.com>
Date: Thu, 13 Dec 2018 23:02:04 -0500
Subject: [PATCH] add package setup

---
 .gitignore      |  2 +-
 MANIFEST.in     |  1 +
 setup.cfg       |  5 +++++
 setup.py        | 45 +++++++++++++++++++++++++++++++++++++++++++++
 src/__init__.py |  6 ++++++
 src/setup.py    | 19 +++++++++++++++++++
 6 files changed, 77 insertions(+), 1 deletion(-)
 create mode 100644 MANIFEST.in
 create mode 100644 setup.cfg
 create mode 100644 setup.py
 create mode 100644 src/setup.py

diff --git a/.gitignore b/.gitignore
index a4a90d6..701fecf 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,7 +1,7 @@
+data/
 
 *.pyc
 
-data/
 .venv
 __pycache__/
 .pytest_cache/
diff --git a/MANIFEST.in b/MANIFEST.in
new file mode 100644
index 0000000..656fc26
--- /dev/null
+++ b/MANIFEST.in
@@ -0,0 +1 @@
+include requirements.txt LICENSE
diff --git a/setup.cfg b/setup.cfg
new file mode 100644
index 0000000..6fedc19
--- /dev/null
+++ b/setup.cfg
@@ -0,0 +1,5 @@
+[metadata]
+description-file = README.md
+
+[bdist_wheel]
+universal=1
diff --git a/setup.py b/setup.py
new file mode 100644
index 0000000..94a2e97
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,45 @@
+# -*- coding: utf-8 -*-
+
+import os, sys
+from setuptools import setup, find_packages
+
+
+PKG_NAME = "TissueLocalizer"
+VERSION = 1.0.0
+DESCRIPTION = "Localize the tissue regions in whole slide pathology images."
+HOMEPAGE = "https://github.com/PingjunChen/TissueLocalizer"
+LICENSE = "MIT"
+AUTHOR_NAME = "Pingjun Chen"
+AUTHOR_EMAIL = "chenpingjun@gmx.com"
+
+REQS = ""
+with open('requirements.txt') as f:
+    REQS = [pkg.replace("==", ">=") for pkg in f.read().splitlines()]
+
+CLASSIFIERS = [
+    'Development Status :: 4 - Beta',
+    'Intended Audience :: Developers',
+    'Intended Audience :: Science/Research',
+    'License :: OSI Approved :: MIT License',
+    'Programming Language :: Python',
+    'Programming Language :: Python :: 3',
+    'Programming Language :: Python :: 3.6',
+    'Topic :: Scientific/Engineering',
+    'Topic :: Computational Pathology',
+    'Topic :: Whole Slide Image Analysis',
+]
+
+args = dict(
+    name=PKG_NAME,
+    version=VERSION,
+    description=DESCRIPTION,
+    url=HOMEPAGE,
+    license=LICENSE,
+    author=AUTHOR_NAME,
+    author_email=AUTHOR_EMAIL,
+    packages=find_packages(),
+    install_requires=REQS,
+    classifiers=CLASSIFIERS,
+)
+
+setup(**args)
diff --git a/src/__init__.py b/src/__init__.py
index e69de29..7a169c9 100644
--- a/src/__init__.py
+++ b/src/__init__.py
@@ -0,0 +1,6 @@
+# -*- coding: utf-8 -*-
+
+import os, sys
+
+from load_slide import *
+from locate_tissue import *
diff --git a/src/setup.py b/src/setup.py
new file mode 100644
index 0000000..0ff39f2
--- /dev/null
+++ b/src/setup.py
@@ -0,0 +1,19 @@
+# -*- coding: utf-8 -*-
+
+import os, sys
+
+BASE_PATH = os.path.abspath(os.path.dirname(__file__))
+PKG_NAME = os.path.basename(BASE_PATH)
+
+def configuration(parent_package='', top_path=None):
+    from numpy.distutils.misc_util import Configuration
+    config = Configuration(PKG_NAME, parent_package, top_path)
+
+    return config
+
+
+if __name__ == "__main__":
+    from numpy.distutils.core import setup
+
+    config = configuration(top_path='').todict()
+    setup(**config)