-- Logs begin at Sun 2019-07-28 16:36:01 PDT, end at Tue 2019-12-31 13:27:29 PST. --
Dec 12 11:50:00 floret.cgrb.oregonstate.local systemd[1]: [/etc/systemd/system/variable-pywsgi.service:11] Executable path is not absolute, ignoring: python3 serve.py
Dec 12 11:50:00 floret.cgrb.oregonstate.local systemd[1]: variable-pywsgi.service lacks both ExecStart= and ExecStop= setting. Refusing.
Dec 12 11:51:38 floret.cgrb.oregonstate.local systemd[1]: Started Variable submission python web server.
Dec 12 11:51:38 floret.cgrb.oregonstate.local systemd[1]: Starting Variable submission python web server...
Dec 12 11:51:39 floret.cgrb.oregonstate.local python3[36278]: * Restarting with stat
Dec 12 12:52:54 floret.cgrb.oregonstate.local systemd[1]: Stopping Variable submission python web server...
Dec 12 12:52:54 floret.cgrb.oregonstate.local systemd[1]: Stopped Variable submission python web server.
Dec 12 13:13:05 floret.cgrb.oregonstate.local systemd[1]: Started Variable submission python web server.
Dec 12 13:13:05 floret.cgrb.oregonstate.local systemd[1]: Starting Variable submission python web server...
Dec 12 13:13:06 floret.cgrb.oregonstate.local python3[59647]: * Restarting with stat
Dec 12 14:01:00 floret.cgrb.oregonstate.local systemd[1]: Stopping Variable submission python web server...
Dec 12 14:01:00 floret.cgrb.oregonstate.local systemd[1]: Stopped Variable submission python web server.
Dec 12 14:02:49 floret.cgrb.oregonstate.local systemd[1]: Started Variable submission python web server.
Dec 12 14:02:49 floret.cgrb.oregonstate.local systemd[1]: Starting Variable submission python web server...
Dec 12 14:02:50 floret.cgrb.oregonstate.local python3[79612]: * Restarting with stat
Dec 19 13:28:57 floret.cgrb.oregonstate.local systemd[1]: Stopping Variable submission python web server...
Dec 19 13:28:57 floret.cgrb.oregonstate.local systemd[1]: Started Variable submission python web server.
Dec 19 13:28:57 floret.cgrb.oregonstate.local systemd[1]: Starting Variable submission python web server...
Dec 19 13:29:01 floret.cgrb.oregonstate.local python3[43465]: * Restarting with stat
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 13:29:10] "GET / HTTP/1.1" 200 27241 0.123939
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 13:29:12] "GET /favicon.ico HTTP/1.1" 404 342 0.015874
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 13:34:18] "GET /deploy?installation_id=5691342&setup_action=update HTTP/1.1" 200 5786 0.027535
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 13:34:34] "POST /deploy/save HTTP/1.1" 200 169 1.231363
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 13:34:35] "GET /deploy?installation_id=5691342&setup_action=update HTTP/1.1" 200 5723 0.001400
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 13:34:39] "GET /deploy?installation_id=5691342&setup_action=update HTTP/1.1" 200 5723 0.002423
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 13:34:43] "GET / HTTP/1.1" 200 27220 0.001534
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 14:17:31] "GET / HTTP/1.1" 200 27220 0.004139
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 14:17:34] "GET / HTTP/1.1" 200 27220 0.002439
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 14:17:35] "GET /favicon.ico HTTP/1.1" 404 342 0.001159
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-19 14:17:40] "GET /variables?repo=Planteome%2Fibp-rice-traits HTTP/1.1" 200 110 0.002291
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-23 20:32:11] "GET /favicon.ico HTTP/1.1" 404 342 0.001081
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 12:48:02] "GET / HTTP/1.1" 200 27220 0.038916
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 12:48:02] "GET /favicon.ico HTTP/1.1" 404 342 0.001101
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 12:48:10] "GET /variables?repo=Planteome%2Fibp-rice-traits HTTP/1.1" 200 110 0.002895
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 12:54:57] "POST /submit/github HTTP/1.1" 200 469 0.175400
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: Traceback (most recent call last):
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/gevent/pywsgi.py", line 935, in handle_one_response
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: self.run_application()
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/gevent/pywsgi.py", line 908, in run_application
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: self.result = self.application(self.environ, self.start_response)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1997, in __call__
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: return self.wsgi_app(environ, start_response)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1985, in wsgi_app
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: response = self.handle_exception(e)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1540, in handle_exception
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: reraise(exc_type, exc_value, tb)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/_compat.py", line 33, in reraise
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: raise value
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1982, in wsgi_app
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: response = self.full_dispatch_request()
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1614, in full_dispatch_request
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: rv = self.handle_user_exception(e)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1517, in handle_user_exception
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: reraise(exc_type, exc_value, tb)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/_compat.py", line 33, in reraise
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: raise value
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1612, in full_dispatch_request
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: rv = self.dispatch_request()
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1598, in dispatch_request
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: return self.view_functions[rule.endpoint](**req.view_args)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/data/www/planteome/Ontology-Variable-Request-App/request_handler.py", line 161, in oauth_receive
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: issue_data, responsecode = make_issue(data,token)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/data/www/planteome/Ontology-Variable-Request-App/request_handler.py", line 55, in make_issue
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: title = "Update: "+data["update-search-selected"]
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: KeyError: 'update-search-selected'
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: Tue Dec 31 12:55:16 2019 {'REMOTE_ADDR': '::1', 'REMOTE_PORT': '49160', 'HTTP_HOST': 'localhost:5000', (hidden keys: 28)} failed with KeyError
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 12:55:16] "GET /authorized/oauth?code=991541d6913f921fdb39&state=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJnb3RvIjoiaXNzdWUiLCJjYWNoZWRfYXMiOjMsIl9fcl9fIjoiWEhZSUhRTUc3NVlUSzI5N1pIWVdXQ0VWSzFDQU1YR1EifQ.ycEcRm2Jq_XNoOXcp4FklERVBg9pW8JnR1_uylU1Sis HTTP/1.1" 500 161 0.497215
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: Traceback (most recent call last):
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/gevent/pywsgi.py", line 935, in handle_one_response
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: self.run_application()
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/gevent/pywsgi.py", line 908, in run_application
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: self.result = self.application(self.environ, self.start_response)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1997, in __call__
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: return self.wsgi_app(environ, start_response)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1985, in wsgi_app
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: response = self.handle_exception(e)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1540, in handle_exception
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: reraise(exc_type, exc_value, tb)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/_compat.py", line 33, in reraise
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: raise value
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1982, in wsgi_app
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: response = self.full_dispatch_request()
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1614, in full_dispatch_request
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: rv = self.handle_user_exception(e)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1517, in handle_user_exception
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: reraise(exc_type, exc_value, tb)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/_compat.py", line 33, in reraise
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: raise value
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1612, in full_dispatch_request
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: rv = self.dispatch_request()
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1598, in dispatch_request
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: return self.view_functions[rule.endpoint](**req.view_args)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/data/www/planteome/Ontology-Variable-Request-App/request_handler.py", line 157, in oauth_receive
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: token = oh.get_token(state,code)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/data/www/planteome/Ontology-Variable-Request-App/githubauthhandler.py", line 53, in get_token
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: return json.loads(r.content)['access_token']
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: KeyError: 'access_token'
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: Tue Dec 31 12:56:12 2019 {'REMOTE_ADDR': '::1', 'REMOTE_PORT': '50674', 'HTTP_HOST': 'localhost:5000', (hidden keys: 29)} failed with KeyError
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 12:56:12] "GET /authorized/oauth?code=991541d6913f921fdb39&state=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJnb3RvIjoiaXNzdWUiLCJjYWNoZWRfYXMiOjMsIl9fcl9fIjoiWEhZSUhRTUc3NVlUSzI5N1pIWVdXQ0VWSzFDQU1YR1EifQ.ycEcRm2Jq_XNoOXcp4FklERVBg9pW8JnR1_uylU1Sis HTTP/1.1" 500 161 0.172523
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 13:00:05] "GET / HTTP/1.1" 200 27220 0.002540
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 13:00:51] "GET / HTTP/1.1" 200 27220 0.002517
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 13:00:51] "GET /favicon.ico HTTP/1.1" 404 342 0.001067
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 13:00:56] "GET /variables?repo=Planteome%2Fibp-rice-traits HTTP/1.1" 200 110 0.003137
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 13:02:18] "POST /submit/github HTTP/1.1" 200 469 0.122713
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 13:02:20] "GET /authorized/oauth?code=8e1a3871883e994208c8&state=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJnb3RvIjoiaXNzdWUiLCJjYWNoZWRfYXMiOjQsIl9fcl9fIjoiTEpDMVo4OTVCUjhONUFCNEg1WTJRQk03VUY4TjRHTUUifQ.Us-XgZ5b4m2oxq4b1ZQ9Pvf-yumNP1sTTMsYGZeSy1E HTTP/1.1" 303 502 1.789539
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 13:02:35] "GET / HTTP/1.1" 200 27220 0.003161
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 13:02:38] "GET /variables?repo=Planteome%2Fibp-rice-traits HTTP/1.1" 200 110 0.002434
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: ::1 - - [2019-12-31 13:03:33] "POST /submit/github HTTP/1.1" 200 469 0.127701
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: Traceback (most recent call last):
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/gevent/pywsgi.py", line 935, in handle_one_response
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: self.run_application()
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/gevent/pywsgi.py", line 908, in run_application
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: self.result = self.application(self.environ, self.start_response)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1997, in __call__
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: return self.wsgi_app(environ, start_response)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1985, in wsgi_app
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: response = self.handle_exception(e)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/app.py", line 1540, in handle_exception
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: reraise(exc_type, exc_value, tb)
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: File "/home/bpp/elserj/.local/lib/python3.6/site-packages/flask/_compat.py", line 33, in reraise
Dec 31 13:03:34 floret.cgrb.oregonstate.local python3[43465]: raise value