An ontology containing plant stresses; biotic and abiotic. Part of the Planteome suite of reference ontologies.
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This ontology contains stresses that a plant encounters, both biotic and abiotic.


Stable release versions

The latest version of the ontology can always be found at:

(note this will not show up until the request has been approved by

Editors' version

Editors of this ontology should use the edit version, src/ontology/oops-edit.owl


Please use this GitHub repository's Issue tracker to request new terms/classes or report errors or specific concerns related to the ontology.

Run pattern apply ---> direct into 'ontology-of-plant-stress.owl'

change Makefile to use 'ontology-of-plant-stress.owl' as the input.

output of >make should be: oops.owl, oops.obo

cat ontology-of-plant-stress.owl | grep Class:\ NCBITaxon #this returns all the NCBI taxon IDs that are in the .owl file #copy paste these into the NCBITaxon_imports.txt and add the root