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Issue with import files for GO and ChEBI #382

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cooperl09 opened this issue Feb 10, 2016 · 5 comments
Open

Issue with import files for GO and ChEBI #382

cooperl09 opened this issue Feb 10, 2016 · 5 comments

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@cooperl09
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cooperl09 commented Feb 10, 2016

There is an issue with the import files for GO and ChEBI, as compared to the other import files being loaded into TO (PO, EO, PATO). The terms are lacking the majority of the metadata such as synonyms, definition, etc. These are not displaying on the browser correctly, for example see:
http://browser.planteome.org/amigo/search/ontology?q=CHEBI:15693

@elserj
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elserj commented Feb 10, 2016

Tagging @cmungall

@cmungall
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This can be changed in the makefile. We often take minimal annotation
subsets to keep the modules small. I'll look at modifying these later.

On 10 Feb 2016, at 14:19, elserj wrote:

Tagging @cmungall


Reply to this email directly or view it on GitHub:
#382 (comment)

@cooperl09
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It looks like the new import files contain more of the information such as id, and synonyms, but they do not show up when the TO file is opened in Protege. Is there a way to change this?

@cmungall
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They should be there. This is what I get when I load plant_trait_ontology.obo.owl:

screen shot 2016-08-15 at 3 17 28 pm

@cooperl09
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I don't see the id in your screen shot above, but you are correct, the synonyms show up.
ID is in the file but does not display

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