Skip to content
@PombertLab

Pombert Lab

Pombert lab @ IIT

Pinned

  1. 3DFI Public

    The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.

    Perl 8 4

  2. SSRG Public

    The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.

    Perl 2 4

  3. A2GB Public

    A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.

    Perl 1

  4. MMH Public

    A simple pipeline to create and search HMM models against reference protein databases.

    Perl 1

  5. ID16S Public

    This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.

    Perl 1 1

  6. This repository contains scripts from published or submitted manuscripts.

    Perl 2 2

Repositories

  • 3DFI Public

    The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.

    Perl 8 MIT 4 0 0 Updated May 13, 2022
  • alphafold Public

    Fork from AlphaFold to ensure compatibility with 3DFI

    Python 0 Apache-2.0 1,380 0 0 Updated Apr 29, 2022
  • Publication_scripts Public

    This repository contains scripts from published or submitted manuscripts.

    Perl 2 MIT 2 0 0 Updated Apr 23, 2022
  • ID16S Public

    This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.

    Perl 1 MIT 1 0 0 Updated Apr 22, 2022
  • Misc Public

    Miscellaneous scripts

    Perl 0 MIT 0 0 0 Updated Apr 9, 2022
  • MMH Public

    A simple pipeline to create and search HMM models against reference protein databases.

    Perl 0 MIT 1 0 0 Updated Apr 8, 2022
  • SSRG Public

    The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.

    Perl 2 MIT 4 0 0 Updated Feb 11, 2022
  • A2GB Public

    A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.

    Perl 1 MIT 0 0 0 Updated Dec 14, 2021
  • A2A Public

    The A2A pipeline guides users from genome assembly to annotations.

    Perl 0 1 0 0 Updated May 9, 2021
  • Old Public

    Contains old miscellaneous scripts for genomics. No longer maintained.

    Perl 1 MIT 0 0 0 Updated Nov 27, 2020

Top languages

Loading…

Most used topics

Loading…