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model diagrams for modules and simulations #184

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achubaty opened this Issue May 13, 2015 · 0 comments

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achubaty commented May 13, 2015

see https://github.com/rich-iannone/DiagrammeR for Sequence diagrams and Gantt charts

Sequence Diagrams

  • use edgeList to produce detailed view of data object dependencies between modules (more detailed than network diagrams we already produce)

Gannt Charts

  • very quick high-level overview of what the model looks like, including timing of events from all modules
  • probably easy to automatically generate for a given simList object
  • each "stripe" represents a module
  • each "bar" represents a module-event, with the width of the bar indicating not duration, but time until next event?

@achubaty achubaty added the documentation label May 13, 2015

@achubaty achubaty added the High priority label Jun 11, 2015

@achubaty achubaty self-assigned this Jun 11, 2015

@achubaty achubaty added enhancement core SpaDES labels Jun 11, 2015

@achubaty achubaty modified the milestone: v1.0.0 Jun 12, 2015

@achubaty achubaty changed the title from model diagrams for sample modules to model diagrams for modules and simulations Jun 12, 2015

achubaty added a commit that referenced this issue Jun 16, 2015

@achubaty
basic gantt chart from simList object (#184)
c6c8d0b

@eliotmcintire eliotmcintire added the in progress label Jun 16, 2015

achubaty added a commit that referenced this issue Jun 16, 2015

@achubaty
improved basic gantt chart (#184)
ef7556b

achubaty added a commit that referenced this issue Jun 16, 2015

@achubaty
generalized functions for gantt charts (#184) 
`eventDiagram` constructs the Gannt chart; the rest are helpers
0897a8c

achubaty added a commit that referenced this issue Jun 16, 2015

@achubaty
generalized functions for creating sim. event diagrams (#184)
67a94ba

achubaty added a commit that referenced this issue Jun 17, 2015

@achubaty
improve formatting of gantt.Rmd output (#184)
39dd1cb

@achubaty achubaty referenced this issue Jun 17, 2015

Closed

allow plotting of full module object dependency graph #181

achubaty added a commit that referenced this issue Jun 17, 2015

@achubaty
new sequence diagram showing detailed object deps (closes #184) 
* `eventDiagram` shows Gantt chart of event sequences
* `moduleDiagram` shows igraph network diagram of deps
* `objectDiagram` shows sequence diagram of object deps btw modules
4f9a051

@achubaty achubaty closed this Jun 17, 2015

@eliotmcintire eliotmcintire removed the in progress label Jun 17, 2015

achubaty added a commit that referenced this issue Jun 17, 2015

@achubaty
update NEWS (#184)
0755294

achubaty added a commit that referenced this issue Jun 17, 2015

@achubaty
cleanup for R CMD check (#184)
dd6dde7

achubaty added a commit that referenced this issue Jun 17, 2015

@achubaty
added new diagrams to spades package overview docs (#184)
783e384
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