PreibischLab

Popular repositories

1. BigStitcher Public

   ImgLib2/BDV implementation of Stitching for large datasets

   Java 47 12

2. RS-FISH Public

   Tool for precise, interactive, fast and scalable FISH spot detection

   Java 33 11

3. multiview-reconstruction Public

   Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

   Java 17 18

4. STIM Public

   Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

   Java 14

5. BigStitcher-Spark Public

   Running compute-intense parts of BigStitcher distributed

   Java 11 6

6. multiview-simulation Public

   Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise

   Java 10 5