Popular repositories

1. BigStitcher BigStitcher Public

   ImgLib2/BDV implementation of Stitching for large datasets

   Java 56 14

2. RS-FISH RS-FISH Public

   Tool for precise, interactive, fast and scalable FISH spot detection

   Java 44 13

3. multiview-reconstruction multiview-reconstruction Public

   Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

   Java 21 22

4. STIM STIM Public

   Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

   Java 19

5. multiview-simulation multiview-simulation Public

   Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise

   Java 12 5

6. dl-cell-counting dl-cell-counting Public

   Repo contains the implementation of the count-ception CNN (Tensorflow + Keras)

   Jupyter Notebook 11 4