diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index ff8d110..69ad2a8 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -5,6 +5,7 @@ on: push: branches: - main + - master # Add permissions to allow deployment permissions: @@ -20,7 +21,7 @@ jobs: - name: Checkout Model Zoo uses: actions/checkout@v3 with: - repository: Project-MONAI/model-zoo + repository: project-monai/model-zoo path: scripts/model-zoo - name: Setup Python and Node @@ -44,8 +45,8 @@ jobs: mkdir -p dist mkdir -p dist/assets/css - # Process model data - python scripts/fetch.py + # Process model data (both model-zoo and HF models) + python scripts/process_models.py # Build files npm run build @@ -68,4 +69,4 @@ jobs: with: folder: dist branch: gh-pages - clean: true # Automatically remove deleted files from the deployment \ No newline at end of file + clean: true # Automatically remove deleted files from the deployment diff --git a/.github/workflows/fetch.py b/.github/workflows/fetch.py deleted file mode 100644 index daa5083..0000000 --- a/.github/workflows/fetch.py +++ /dev/null @@ -1,190 +0,0 @@ -from monai.bundle import download -from monai.bundle.config_parser import ConfigParser -from jinja2 import Environment, FileSystemLoader -from bs4 import BeautifulSoup -import markdown -import requests -import json -import tempfile -import os -import re - -def _get_all_bundles_info(repo: str = "Project-MONAI/model-zoo", tag: str = "hosting_storage_v1"): - request_url = f"https://api.github.com/repos/{repo}/releases" - resp = requests.get(request_url) - resp.raise_for_status() - releases_list = json.loads(resp.text) - bundle_name_pattern = re.compile(r"_v\d*.") - bundles_info: Dict = {} - - for release in releases_list: - if release["tag_name"] == tag: - for asset in release["assets"]: - asset_name = bundle_name_pattern.split(asset["name"])[0] - if asset_name not in bundles_info: - bundles_info[asset_name] = {} - asset_version = asset["name"].split(f"{asset_name}_v")[-1].replace(".zip", "") - bundles_info[asset_name][asset_version] = { - "id": asset["id"], - "name": asset["name"], - "size": asset["size"], - "download_count": asset["download_count"], - "browser_download_url": asset["browser_download_url"], - "created_at": asset["created_at"], - "updated_at": asset["updated_at"], - } - - return bundles_info - -def get_bundle_web_data(bundle_name, download_dir, all_bundles_info): - current_bundle = all_bundles_info[bundle_name] - - web_data = {} - web_data["bundle_name"] = bundle_name - - download_count = 0 - - for key, item in current_bundle.items(): - download_count += item["download_count"] - web_data["downloads"] = download_count - - latest_version = sorted(current_bundle.keys())[-1] - - if "updated_at" in current_bundle[latest_version]: - web_data["latest_update"] = current_bundle[latest_version]["updated_at"] - - # download zip file and get readme, license, metadata path - download(name=bundle_name, version=latest_version, bundle_dir=download_dir) - - #determine readme filepath - readme_path = "" - docs_path = os.path.join(download_dir, bundle_name, "docs") - files = [f for f in os.listdir(docs_path) if os.path.isfile(os.path.join(docs_path, f))] - for name in files: - if "readme.md" in name.lower(): - readme_path = os.path.join(download_dir, bundle_name, "docs", name) - - if os.path.exists(readme_path): - with open(readme_path, 'r', encoding="utf-8") as f: - text = f.read() - readme_html = markdown.markdown(text, extensions=['tables', 'fenced_code']) - readme_soup = BeautifulSoup(readme_html, "html.parser") - for img in readme_soup.find_all('img'): - img_urls = img['src'] - if "https:" not in img_urls and "http:" not in img_urls: - img_urls="https://raw.githubusercontent.com/Project-MONAI/model-zoo/dev/models/{bundle_name}/docs/{img_name}".format(bundle_name=bundle_name, img_name=img_urls) - img['src'] = img_urls - for a in readme_soup.find_all('a'): - a_urls = a['href'] - if "https:" not in a_urls and "http:" not in a_urls: - a_urls="https://raw.githubusercontent.com/Project-MONAI/model-zoo/dev/models/{bundle_name}/docs/{a_name}".format(bundle_name=bundle_name, a_name=a_urls) - a['href'] = a_urls - - web_data["readme_path"] = readme_path - web_data["readme_html"] = readme_soup - - license_path = os.path.join(download_dir, bundle_name, "docs", "license.txt") - if os.path.exists(license_path): - web_data["license_path"] = license_path - - metadata_path = os.path.join(download_dir, bundle_name, "configs", "metadata.json") - if os.path.exists(metadata_path): - web_data["metadata"] = ConfigParser.load_config_file(metadata_path) - - web_data["download_url"] = current_bundle[latest_version]["browser_download_url"] - web_data["size"] = current_bundle[latest_version]["size"] - web_data["image_path"] = "https://raw.githubusercontent.com/Project-MONAI/model-zoo/dev/models/" + bundle_name + "/docs/" - - return web_data - -def main(): - all_bundle_list = _get_all_bundles_info() - temp_dir = tempfile.mkdtemp() - - all_models = {} - for item in all_bundle_list.items(): - bundle_name = item[0] - bundle_web_data = get_bundle_web_data(bundle_name, temp_dir, all_bundle_list) - all_models[bundle_name] = bundle_web_data - - - environment = Environment(loader=FileSystemLoader("./templates/")) - template = environment.get_template("model-template.html") - template_string = "" - final_string = "" - - for model in all_models: - model_values = {} - try: - model_values["model_name"] = model.replace("_", " ").capitalize() - except KeyError: - model_values["model_name"] = "" - - try: - model_values["description"] = all_models[model]["metadata"]["description"] - except KeyError: - model_values["description"] = "" - - try: - model_values["authors"] = all_models[model]["metadata"]["authors"] - except KeyError: - model_values["authors"] = "" - - try: - model_values["papers"] = all_models[model]["metadata"]["references"] - except KeyError: - model_values["papers"] = [] - - try: - model_values["version"] = all_models[model]["metadata"]["version"] - except KeyError: - model_values["version"] = [] - - try: - model_values["download_url"] = all_models[model]["download_url"] - except KeyError: - model_values["download_url"] = "" - - try: - model_values["downloads"] = all_models[model]["downloads"] - except KeyError: - model_values["downloads"] = 0 - - try: - model_values["last_updated"] = all_models[model]["last_updated"] - except KeyError: - model_values["last_updated"] = "" - - try: - model_values["readme"] = all_models[model]["readme_html"] - except KeyError: - model_values["readme"] = "" - - try: - file_size = all_models[model]["size"] - model_values["size"] = str(round(file_size / 1048576, 1)) + "MB" - except KeyError: - model_values["size"] = "" - - content = template.render(model_values) - template_string += str(content) - - with open("model-zoo.html", "r", encoding="utf-8") as f: - contents = f.read() - - model_zoo_soup = BeautifulSoup(contents, "html.parser") - generated_model_soup = BeautifulSoup(template_string, "html.parser") - - model_entry = model_zoo_soup.find(id="all_models") - model_entry.clear() - model_entry.append(generated_model_soup) - final_string = model_zoo_soup.prettify() - f.close() - - with open("model-zoo.html", "w", encoding="utf-8") as f: - f.write(final_string) - f.close() - - -if __name__ == '__main__': - main() diff --git a/.github/workflows/fetch.yml b/.github/workflows/fetch.yml deleted file mode 100644 index 25b0441..0000000 --- a/.github/workflows/fetch.yml +++ /dev/null @@ -1,58 +0,0 @@ -# This is a basic workflow to help you get started with Actions - -name: Model Zoo Fetch and Generate - -# Controls when the workflow will run -on: - # Triggers the workflow on push or pull request events but only for the "master" branch - schedule: - - cron: "0 0 * * 0" - - push: - branches: - - master - - # Allows you to run this workflow manually from the Actions tab - workflow_dispatch: - -# A workflow run is made up of one or more jobs that can run sequentially or in parallel -jobs: - # This workflow contains a single job called "build" - build: - # The type of runner that the job will run on - runs-on: ubuntu-latest - - # Steps represent a sequence of tasks that will be executed as part of the job - steps: - # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it - - uses: actions/checkout@v3 - - - name: Install MONAI - run: pip install git+https://github.com/Project-MONAI/MONAI#egg=monai - - - name: Install jinja2 - run: pip install Jinja2 - - - name: Install Markdown - run: pip install Markdown - - - name: Install BeautifulSoup4 - run: pip install beautifulsoup4 - - - name: Generate Model Zoo HTML - run: python .github/workflows/fetch.py - - - name: Commit files - run: | - git config --local user.email "github-actions[bot]@users.noreply.github.com" - git config --local user.name "github-actions[bot]" - git add . - git commit -m "Rebuild Model Zoo" - - - name: Push changes - uses: ad-m/github-push-action@master - with: - github_token: ${{ secrets.MODEL_ZOO_DIST }} - branch: dist - force: true - diff --git a/model_data.json b/model_data.json new file mode 100644 index 0000000..9e26dfe --- /dev/null +++ b/model_data.json @@ -0,0 +1 @@ +{} \ No newline at end of file diff --git a/package-lock.json b/package-lock.json index 9ee595d..78a8a54 100644 --- a/package-lock.json +++ b/package-lock.json @@ -15,8 +15,10 @@ "devDependencies": { "@babel/cli": "^7.26.4", "@babel/core": "^7.26.7", + "@babel/plugin-transform-react-jsx": "^7.22.5", + "@babel/preset-env": "^7.22.5", "@babel/preset-react": "^7.26.3", - "@tailwindcss/typography": "^0.5.7", + "@tailwindcss/typography": "^0.5.10", "autoprefixer": "^10.4.7", "chokidar": "^3.5.3", "connect-livereload": "^0.6.1", @@ -28,9 +30,9 @@ "npm-run-all": "^4.1.5", "postcss": "^8.4.31", "postcss-cli": "^10.1.0", - "rimraf": "^5.0.1", + "rimraf": "^5.0.0", "sharp": 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+ "peerDependencies": { + "@babel/core": "^7.4.0 || ^8.0.0-0 <8.0.0" + } + }, + "node_modules/babel-plugin-polyfill-corejs2/node_modules/semver": { + "version": "6.3.1", + "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz", + "integrity": "sha512-BR7VvDCVHO+q2xBEWskxS6DJE1qRnb7DxzUrogb71CWoSficBxYsiAGd+Kl0mmq/MprG9yArRkyrQxTO6XjMzA==", + "dev": true, + "license": "ISC", + "bin": { + "semver": "bin/semver.js" + } + }, + "node_modules/babel-plugin-polyfill-corejs3": { + "version": "0.11.1", + "resolved": "https://registry.npmjs.org/babel-plugin-polyfill-corejs3/-/babel-plugin-polyfill-corejs3-0.11.1.tgz", + "integrity": "sha512-yGCqvBT4rwMczo28xkH/noxJ6MZ4nJfkVYdoDaC/utLtWrXxv27HVrzAeSbqR8SxDsp46n0YF47EbHoixy6rXQ==", + "dev": true, + "license": "MIT", + "dependencies": { + "@babel/helper-define-polyfill-provider": "^0.6.3", + "core-js-compat": "^3.40.0" + }, + "peerDependencies": { + "@babel/core": "^7.4.0 || ^8.0.0-0 <8.0.0" + } + }, + "node_modules/babel-plugin-polyfill-regenerator": { + "version": "0.6.3", + "resolved": "https://registry.npmjs.org/babel-plugin-polyfill-regenerator/-/babel-plugin-polyfill-regenerator-0.6.3.tgz", + "integrity": "sha512-LiWSbl4CRSIa5x/JAU6jZiG9eit9w6mz+yVMFwDE83LAWvt0AfGBoZ7HS/mkhrKuh2ZlzfVZYKoLjXdqw6Yt7Q==", + "dev": true, + "license": "MIT", + "dependencies": { + "@babel/helper-define-polyfill-provider": "^0.6.3" + }, + "peerDependencies": { + "@babel/core": "^7.4.0 || ^8.0.0-0 <8.0.0" + } + }, "node_modules/balanced-match": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/balanced-match/-/balanced-match-1.0.2.tgz", @@ -1828,6 +3181,20 @@ "node": ">=0.10.0" } }, + "node_modules/core-js-compat": { + "version": "3.41.0", + "resolved": "https://registry.npmjs.org/core-js-compat/-/core-js-compat-3.41.0.tgz", + "integrity": "sha512-RFsU9LySVue9RTwdDVX/T0e2Y6jRYWXERKElIjpuEOEnxaXffI0X7RUwVzfYLfzuLXSNJDYoRYUAmRUcyln20A==", + "dev": true, + "license": "MIT", + "dependencies": { + "browserslist": "^4.24.4" + }, + "funding": { + "type": "opencollective", + "url": "https://opencollective.com/core-js" + } + }, "node_modules/core-util-is": { "version": "1.0.3", "resolved": "https://registry.npmjs.org/core-util-is/-/core-util-is-1.0.3.tgz", @@ -2591,6 +3958,16 @@ "node": ">=0.8.0" } }, + "node_modules/esutils": { + "version": "2.0.3", + "resolved": "https://registry.npmjs.org/esutils/-/esutils-2.0.3.tgz", + "integrity": "sha512-kVscqXk4OCp68SZ0dkgEKVi6/8ij300KBWTJq32P/dYeWTSwK41WyTxalN1eRmA5Z9UU/LX9D7FWSmV9SAYx6g==", + "dev": true, + "license": "BSD-2-Clause", + "engines": { + "node": ">=0.10.0" + } + }, "node_modules/etag": { "version": "1.8.1", "resolved": "https://registry.npmjs.org/etag/-/etag-1.8.1.tgz", @@ -4477,6 +5854,13 @@ "dev": true, "license": "MIT" }, + "node_modules/lodash.debounce": { + "version": "4.0.8", + "resolved": "https://registry.npmjs.org/lodash.debounce/-/lodash.debounce-4.0.8.tgz", + "integrity": "sha512-FT1yDzDYEoYWhnSGnpE/4Kj1fLZkDFyqRb7fNt6FdYOSxlUWAtp42Eh6Wb0rGIv/m9Bgo7x4GhQbm5Ys4SG5ow==", + "dev": true, + "license": "MIT" + }, "node_modules/lodash.isplainobject": { "version": "4.0.6", "resolved": "https://registry.npmjs.org/lodash.isplainobject/-/lodash.isplainobject-4.0.6.tgz", @@ -6447,6 +7831,43 @@ "url": "https://github.com/sponsors/ljharb" } }, + "node_modules/regenerate": { + "version": "1.4.2", + "resolved": "https://registry.npmjs.org/regenerate/-/regenerate-1.4.2.tgz", + "integrity": "sha512-zrceR/XhGYU/d/opr2EKO7aRHUeiBI8qjtfHqADTwZd6Szfy16la6kqD0MIUs5z5hx6AaKa+PixpPrR289+I0A==", + "dev": true, + "license": "MIT" + }, + "node_modules/regenerate-unicode-properties": { + "version": "10.2.0", + "resolved": "https://registry.npmjs.org/regenerate-unicode-properties/-/regenerate-unicode-properties-10.2.0.tgz", + "integrity": "sha512-DqHn3DwbmmPVzeKj9woBadqmXxLvQoQIwu7nopMc72ztvxVmVk2SBhSnx67zuye5TP+lJsb/TBQsjLKhnDf3MA==", + "dev": true, + "license": "MIT", + "dependencies": { + "regenerate": "^1.4.2" + }, + "engines": { + "node": ">=4" + } + }, + "node_modules/regenerator-runtime": { + "version": "0.14.1", + "resolved": "https://registry.npmjs.org/regenerator-runtime/-/regenerator-runtime-0.14.1.tgz", + "integrity": "sha512-dYnhHh0nJoMfnkZs6GmmhFknAGRrLznOu5nc9ML+EJxGvrx6H7teuevqVqCuPcPK//3eDrrjQhehXVx9cnkGdw==", + "dev": true, + "license": "MIT" + }, + "node_modules/regenerator-transform": { + "version": "0.15.2", + "resolved": "https://registry.npmjs.org/regenerator-transform/-/regenerator-transform-0.15.2.tgz", + "integrity": "sha512-hfMp2BoF0qOk3uc5V20ALGDS2ddjQaLrdl7xrGXvAIow7qeWRM2VA2HuCHkUKk9slq3VwEwLNK3DFBqDfPGYtg==", + "dev": true, + "license": "MIT", + "dependencies": { + "@babel/runtime": "^7.8.4" + } + }, "node_modules/regex-not": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/regex-not/-/regex-not-1.0.2.tgz", @@ -6509,6 +7930,57 @@ "url": "https://github.com/sponsors/ljharb" } }, + "node_modules/regexpu-core": { + "version": "6.2.0", + "resolved": "https://registry.npmjs.org/regexpu-core/-/regexpu-core-6.2.0.tgz", + "integrity": "sha512-H66BPQMrv+V16t8xtmq+UC0CBpiTBA60V8ibS1QVReIp8T1z8hwFxqcGzm9K6lgsN7sB5edVH8a+ze6Fqm4weA==", + "dev": true, + "license": "MIT", + "dependencies": { + "regenerate": "^1.4.2", + "regenerate-unicode-properties": "^10.2.0", + "regjsgen": "^0.8.0", + "regjsparser": "^0.12.0", + "unicode-match-property-ecmascript": "^2.0.0", + "unicode-match-property-value-ecmascript": "^2.1.0" + }, + "engines": { + "node": ">=4" + } + }, + "node_modules/regjsgen": { + "version": "0.8.0", + "resolved": "https://registry.npmjs.org/regjsgen/-/regjsgen-0.8.0.tgz", + "integrity": "sha512-RvwtGe3d7LvWiDQXeQw8p5asZUmfU1G/l6WbUXeHta7Y2PEIvBTwH6E2EfmYUK8pxcxEdEmaomqyp0vZZ7C+3Q==", + "dev": true, + "license": "MIT" + }, + "node_modules/regjsparser": { + "version": "0.12.0", + "resolved": "https://registry.npmjs.org/regjsparser/-/regjsparser-0.12.0.tgz", + "integrity": "sha512-cnE+y8bz4NhMjISKbgeVJtqNbtf5QpjZP+Bslo+UqkIt9QPnX9q095eiRRASJG1/tz6dlNr6Z5NsBiWYokp6EQ==", + "dev": true, + "license": "BSD-2-Clause", + "dependencies": { + "jsesc": "~3.0.2" + }, + "bin": { + "regjsparser": "bin/parser" + } + }, + "node_modules/regjsparser/node_modules/jsesc": { + "version": "3.0.2", + "resolved": "https://registry.npmjs.org/jsesc/-/jsesc-3.0.2.tgz", + "integrity": "sha512-xKqzzWXDttJuOcawBt4KnKHHIf5oQ/Cxax+0PWFG+DFDgHNAdi+TXECADI+RYiFUMmx8792xsMbbgXj4CwnP4g==", + "dev": true, + "license": "MIT", + "bin": { + "jsesc": "bin/jsesc" + }, + "engines": { + "node": ">=6" + } + }, "node_modules/relateurl": { "version": "0.2.7", "resolved": "https://registry.npmjs.org/relateurl/-/relateurl-0.2.7.tgz", @@ -8191,6 +9663,50 @@ "url": "https://github.com/sponsors/ljharb" } }, + "node_modules/unicode-canonical-property-names-ecmascript": { + "version": "2.0.1", + "resolved": "https://registry.npmjs.org/unicode-canonical-property-names-ecmascript/-/unicode-canonical-property-names-ecmascript-2.0.1.tgz", + "integrity": "sha512-dA8WbNeb2a6oQzAQ55YlT5vQAWGV9WXOsi3SskE3bcCdM0P4SDd+24zS/OCacdRq5BkdsRj9q3Pg6YyQoxIGqg==", + "dev": true, + "license": "MIT", + "engines": { + "node": ">=4" + } + }, + "node_modules/unicode-match-property-ecmascript": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/unicode-match-property-ecmascript/-/unicode-match-property-ecmascript-2.0.0.tgz", + "integrity": "sha512-5kaZCrbp5mmbz5ulBkDkbY0SsPOjKqVS35VpL9ulMPfSl0J0Xsm+9Evphv9CoIZFwre7aJoa94AY6seMKGVN5Q==", + "dev": true, + "license": "MIT", + "dependencies": { + "unicode-canonical-property-names-ecmascript": "^2.0.0", + "unicode-property-aliases-ecmascript": "^2.0.0" + }, + "engines": { + "node": ">=4" + } + }, + "node_modules/unicode-match-property-value-ecmascript": { + "version": "2.2.0", + "resolved": "https://registry.npmjs.org/unicode-match-property-value-ecmascript/-/unicode-match-property-value-ecmascript-2.2.0.tgz", + "integrity": "sha512-4IehN3V/+kkr5YeSSDDQG8QLqO26XpL2XP3GQtqwlT/QYSECAwFztxVHjlbh0+gjJ3XmNLS0zDsbgs9jWKExLg==", + "dev": true, + "license": "MIT", + "engines": { + "node": ">=4" + } + }, + "node_modules/unicode-property-aliases-ecmascript": { + "version": "2.1.0", + "resolved": "https://registry.npmjs.org/unicode-property-aliases-ecmascript/-/unicode-property-aliases-ecmascript-2.1.0.tgz", + "integrity": "sha512-6t3foTQI9qne+OZoVQB/8x8rk2k1eVy1gRXhV3oFQ5T6R1dqQ1xtin3XqSlx3+ATBkliTaR/hHyJBm+LVPNM8w==", + "dev": true, + "license": "MIT", + "engines": { + "node": ">=4" + } + }, "node_modules/union-value": { "version": "1.0.1", "resolved": "https://registry.npmjs.org/union-value/-/union-value-1.0.1.tgz", diff --git a/package.json b/package.json index 3e8cf4c..8f36050 100644 --- a/package.json +++ b/package.json @@ -44,5 +44,6 @@ "@tailwindcss/aspect-ratio": "^0.4.0", "@tailwindcss/line-clamp": "^0.4.0", "kutty": "^0.6.0" - } + }, + "packageManager": "yarn@1.22.22+sha512.a6b2f7906b721bba3d67d4aff083df04dad64c399707841b7acf00f6b133b7ac24255f2652fa22ae3534329dc6180534e98d17432037ff6fd140556e2bb3137e" } diff --git a/scripts/fetch.py b/scripts/fetch.py deleted file mode 100644 index 8a31804..0000000 --- a/scripts/fetch.py +++ /dev/null @@ -1,71 +0,0 @@ -import os -import json -import re -from pathlib import Path -from bs4 import BeautifulSoup -import markdown - -def get_latest_version(versions): - numeric_versions = [v.split('_v')[-1] for v in versions if v.split('_v')[-1].replace('.', '').isdigit()] - return max(numeric_versions, key=lambda k: tuple(map(int, k.split('.')))) if numeric_versions else max(versions) - -def get_model_info(model_dir): - metadata_path = os.path.join(model_dir, "configs", "metadata.json") - readme_path = os.path.join(model_dir, "docs", "README.md") - - with open(metadata_path, 'r') as f: - metadata = json.load(f) - - with open(readme_path, 'r') as f: - readme_content = f.read() - readme_html = markdown.markdown(readme_content, extensions=['tables', 'fenced_code']) - readme_soup = BeautifulSoup(readme_html, "html.parser") - - return metadata, readme_soup - -def main(): - # Get the directory containing this script - script_dir = Path(__file__).parent - models_dir = script_dir / "model-zoo" / "models" - model_info_path = models_dir / "model_info.json" - output_file = script_dir / "model_data.json" - - # Load model_info.json - with open(model_info_path, 'r') as f: - model_info = json.load(f) - - all_models = {} - for model_full_name, model_data in model_info.items(): - base_model_name = model_full_name.split('_v')[0] - model_dir = models_dir / base_model_name - - if not model_dir.exists(): - continue - - versions = [k for k in model_info if k.startswith(base_model_name)] - latest_version = get_latest_version(versions) - - try: - metadata, readme_soup = get_model_info(str(model_dir)) - - all_models[base_model_name] = { - "model_name": metadata.get("name", base_model_name.replace("_", " ").capitalize()), - "description": metadata.get("description", ""), - "authors": metadata.get("authors", "MONAI team"), - "papers": metadata.get("references", []), - "version": latest_version, - "model_id": base_model_name, - "readme": str(readme_soup), - "download_url": model_data.get("source", ""), - "changelog": metadata.get("changelog") # Get changelog directly from metadata - } - except Exception as e: - print(f"Error processing {base_model_name}: {str(e)}") - continue - - # Write the combined data to a JSON file - with open(output_file, 'w', encoding='utf-8') as f: - json.dump(all_models, f, indent=4, ensure_ascii=False) - -if __name__ == "__main__": - main() \ No newline at end of file diff --git a/scripts/process_models.py b/scripts/process_models.py new file mode 100755 index 0000000..68dad8f --- /dev/null +++ b/scripts/process_models.py @@ -0,0 +1,129 @@ +#!/usr/bin/env python3 +""" +Process models from MONAI Model Zoo to create a model_data.json file for the website. +HuggingFace models are now managed in the model-zoo repository. +""" + +import os +import json +from pathlib import Path +import markdown +from bs4 import BeautifulSoup + +def get_latest_version(versions): + """Find the latest version from a list of versioned model names.""" + numeric_versions = [v.split('_v')[-1] for v in versions if v.split('_v')[-1].replace('.', '').isdigit()] + return max(numeric_versions, key=lambda k: tuple(map(int, k.split('.')))) if numeric_versions else max(versions) + +def get_model_info(model_dir): + """Extract metadata and README from a MONAI Model Zoo model.""" + metadata_path = os.path.join(model_dir, "configs", "metadata.json") + readme_path = os.path.join(model_dir, "docs", "README.md") + + with open(metadata_path, 'r') as f: + metadata = json.load(f) + + with open(readme_path, 'r') as f: + readme_content = f.read() + readme_html = markdown.markdown(readme_content, extensions=['tables', 'fenced_code']) + readme_soup = BeautifulSoup(readme_html, "html.parser") + + return metadata, readme_soup + +def get_hf_model_info(model_dir): + """Extract metadata and README from a HuggingFace model folder in model-zoo.""" + metadata_path = os.path.join(model_dir, "metadata.json") + readme_path = os.path.join(model_dir, "README.md") + + with open(metadata_path, 'r') as f: + metadata = json.load(f) + + with open(readme_path, 'r') as f: + readme_content = f.read() + readme_html = markdown.markdown(readme_content, extensions=['tables', 'fenced_code']) + readme_soup = BeautifulSoup(readme_html, "html.parser") + + return metadata, readme_soup + +def process_models(): + """Process all models and create a unified model_data.json file.""" + # Get the directory containing this script + script_dir = Path(__file__).parent + repo_root = script_dir.parent + models_dir = script_dir / "model-zoo" / "models" + hf_models_dir = script_dir / "model-zoo" / "hf_models" + model_info_path = models_dir / "model_info.json" + output_file = script_dir / "model_data.json" + + all_models = {} + + # Process regular model-zoo models if the model_info.json exists + if model_info_path.exists(): + with open(model_info_path, 'r') as f: + model_info = json.load(f) + + for model_full_name, model_data in model_info.items(): + base_model_name = model_full_name.split('_v')[0] + model_dir = models_dir / base_model_name + + if not model_dir.exists(): + continue + + versions = [k for k in model_info if k.startswith(base_model_name)] + latest_version = get_latest_version(versions) + + try: + metadata, readme_soup = get_model_info(str(model_dir)) + + all_models[base_model_name] = { + "model_name": metadata.get("name", base_model_name.replace("_", " ").capitalize()), + "description": metadata.get("description", ""), + "authors": metadata.get("authors", "MONAI team"), + "papers": metadata.get("references", []), + "version": latest_version, + "model_id": base_model_name, + "readme": str(readme_soup), + "download_url": model_data.get("source", ""), + "changelog": metadata.get("changelog", {}) + } + print(f"Processed model: {base_model_name}") + except Exception as e: + print(f"Error processing {base_model_name}: {str(e)}") + continue + + # Process HuggingFace models + if hf_models_dir.exists(): + # List all subdirectories in the hf_models directory + hf_model_dirs = [d for d in hf_models_dir.iterdir() if d.is_dir()] + + for model_dir in hf_model_dirs: + try: + model_id = f"hf_{model_dir.name}" + metadata, readme_soup = get_hf_model_info(str(model_dir)) + + # Extract model info from metadata.json + all_models[model_id] = { + "model_name": metadata.get("name", model_dir.name.replace("_", " ").capitalize()), + "description": metadata.get("description", ""), + "authors": metadata.get("authors", "MONAI team"), + "papers": metadata.get("references", []), + "version": metadata.get("version", "1.0"), + "model_id": model_id, + "readme": str(readme_soup), + "huggingface_url": metadata.get("huggingface_url", ""), + "changelog": metadata.get("changelog", {}) + } + print(f"Processed HF model: {model_id}") + except Exception as e: + print(f"Error processing HF model {model_dir.name}: {str(e)}") + continue + + # Write the combined data to a JSON file + with open(output_file, 'w', encoding='utf-8') as f: + json.dump(all_models, f, indent=4, ensure_ascii=False) + + print(f"Generated model data with {len(all_models)} models") + return all_models + +if __name__ == "__main__": + process_models() \ No newline at end of file diff --git a/src/model-zoo.js b/src/model-zoo.js index 23e1351..0857124 100644 --- a/src/model-zoo.js +++ b/src/model-zoo.js @@ -1,18 +1,69 @@ const { useState, useEffect } = React; function formatDownloadUrl(model) { - // Extract model name and version + // If the model has an explicit download_url, use it + if (model.download_url) { + return model.download_url; + } + + // If the model has a huggingface_url, use that + if (model.huggingface_url) { + return model.huggingface_url; + } + + // For traditional MONAI models, use the proxy URL format const modelName = model.model_name.toLowerCase().replace(/\s+/g, '_'); const version = model.version; return `https://proxy.monai.io/proxy/download/${modelName}/versions/${version}/files/${modelName}_v${version}.zip`; } +function TagFilter({ tags, activeTag, onTagChange }) { + return ( +
+ + {tags.map((tag) => ( + + ))} +
+ ); +} + function ModelCard({ model, onViewDetails }) { + const isHuggingFaceModel = model.huggingface_url || (model.model_id && model.model_id.startsWith('hf_')); + const modelTag = isHuggingFaceModel ? "HF" : "Bundle"; + const tagColorClass = isHuggingFaceModel + ? "bg-blue-100 text-blue-800" + : "bg-green-100 text-green-800"; + return (

{model.model_name}

+
+ {modelTag} Model +
{model.authors}

{model.description}

@@ -39,11 +90,12 @@ function ModelCard({ model, onViewDetails }) { - Download + {isHuggingFaceModel ? "View on HF" : "Download"} - +
@@ -56,6 +108,12 @@ function ModelCard({ model, onViewDetails }) { function ModelDetailsModal({ model, onClose }) { if (!model) return null; + const isHuggingFaceModel = model.huggingface_url || (model.model_id && model.model_id.startsWith('hf_')); + const modelTag = isHuggingFaceModel ? "HF" : "Bundle"; + const tagColorClass = isHuggingFaceModel + ? "bg-blue-100 text-blue-800" + : "bg-green-100 text-green-800"; + const handleBackdropClick = (e) => { if (e.target === e.currentTarget) { onClose(); @@ -90,18 +148,26 @@ function ModelDetailsModal({ model, onClose }) {
-

{model.model_name}

+

{model.model_name}

+
+ {modelTag} Model +

Version {model.version}

- Download + {isHuggingFaceModel ? "View on HF" : "Download"} - +
@@ -214,11 +298,20 @@ function ModelDetailsModal({ model, onClose }) { - Download Model + {isHuggingFaceModel ? "View on Hugging Face" : "Download Model"} - +
@@ -231,16 +324,44 @@ function ModelDetailsModal({ model, onClose }) { function ModelZoo() { const [models, setModels] = useState([]); const [selectedModel, setSelectedModel] = useState(null); + const [activeTag, setActiveTag] = useState(null); + const [modelCount, setModelCount] = useState({ total: 0, bundle: 0, hf: 0 }); useEffect(() => { const url = './model_data.json'; console.log('Fetching data from:', url); fetch(url) .then(response => response.json()) - .then(data => setModels(Object.values(data))) + .then(data => { + const modelList = Object.values(data); + setModels(modelList); + + // Count models by type + const bundleCount = modelList.filter(model => + !(model.huggingface_url || (model.model_id && model.model_id.startsWith('hf_'))) + ).length; + + const hfCount = modelList.filter(model => + model.huggingface_url || (model.model_id && model.model_id.startsWith('hf_')) + ).length; + + setModelCount({ + total: modelList.length, + bundle: bundleCount, + hf: hfCount + }); + }) .catch(error => console.error('Error fetching data:', error)); }, []); + // Filter models based on selected tag + const filteredModels = activeTag === null + ? models + : models.filter(model => { + const isHF = model.huggingface_url || (model.model_id && model.model_id.startsWith('hf_')); + return activeTag === 'HF' ? isHF : !isHF; + }); + return (
@@ -305,17 +426,39 @@ function ModelZoo() {
-

- Available Models -

+
+

+ Available Models +

+
+
+ {modelCount.total} models available + ({modelCount.bundle} Bundle, + {modelCount.hf} HF) +
+
+
+ + +
- {models.map((model, index) => ( + {filteredModels.map((model, index) => ( ))} + + {filteredModels.length === 0 && ( +
+

No models found matching the selected filter.

+
+ )}