test error: ./modules/jupyter_utils.ipynb #569
Description
Describe the bug
03:06:50 Running ./modules/jupyter_utils.ipynb
03:06:50 Checking PEP8 compliance...
03:06:51 Running notebook...
03:06:51 Before:
03:06:51 "max_epochs = 10\n",
03:06:51 After:
03:06:51 "max_epochs = 1\n",
03:06:52 /opt/conda/lib/python3.8/site-packages/papermill/iorw.py:58: FutureWarning: pyarrow.HadoopFileSystem is deprecated as of 2.0.0, please use pyarrow.fs.HadoopFileSystem instead.
03:06:52 from pyarrow import HadoopFileSystem
03:07:06
Executing: 0%| | 0/19 [00:00<?, ?cell/s]
Executing: 5%|▌ | 1/19 [00:01<00:24, 1.33s/cell]
Executing: 16%|█▌ | 3/19 [00:05<00:29, 1.87s/cell]
Executing: 26%|██▋ | 5/19 [00:08<00:23, 1.67s/cell]
Executing: 37%|███▋ | 7/19 [00:09<00:14, 1.19s/cell]
Executing: 47%|████▋ | 9/19 [00:12<00:12, 1.29s/cell]
Executing: 89%|████████▉ | 17/19 [00:12<00:00, 2.22cell/s]
Executing: 89%|████████▉ | 17/19 [00:13<00:01, 1.22cell/s]
03:07:06 Traceback (most recent call last):
03:07:06 File "/opt/conda/bin/papermill", line 8, in <module>
03:07:06 sys.exit(papermill())
03:07:06 File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 1128, in __call__
03:07:06 return self.main(*args, **kwargs)
03:07:06 File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 1053, in main
03:07:06 rv = self.invoke(ctx)
03:07:06 File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 1395, in invoke
03:07:06 return ctx.invoke(self.callback, **ctx.params)
03:07:06 File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 754, in invoke
03:07:06 return __callback(*args, **kwargs)
03:07:06 File "/opt/conda/lib/python3.8/site-packages/click/decorators.py", line 26, in new_func
03:07:06 return f(get_current_context(), *args, **kwargs)
03:07:06 File "/opt/conda/lib/python3.8/site-packages/papermill/cli.py", line 250, in papermill
03:07:06 execute_notebook(
03:07:06 File "/opt/conda/lib/python3.8/site-packages/papermill/execute.py", line 122, in execute_notebook
03:07:06 raise_for_execution_errors(nb, output_path)
03:07:06 File "/opt/conda/lib/python3.8/site-packages/papermill/execute.py", line 234, in raise_for_execution_errors
03:07:06 raise error
03:07:06 papermill.exceptions.PapermillExecutionError:
03:07:06 ---------------------------------------------------------------------------
03:07:06 Exception encountered at "In [8]":
03:07:06 ---------------------------------------------------------------------------
03:07:06 RuntimeError Traceback (most recent call last)
03:07:06 /tmp/ipykernel_12713/2399949437.py in <module>
03:07:06 ----> 1 con.plot_status(logger)
03:07:06
03:07:06 /opt/conda/lib/python3.8/site-packages/monai/utils/jupyter_utils.py in plot_status(self, logger, plot_func)
03:07:06 364 """
03:07:06 365 with self.lock:
03:07:06 --> 366 self.fig, _ = plot_func(title=self.status(), engine=self.engine, logger=logger, fig=self.fig)
03:07:06 367 return self.fig
03:07:06
03:07:06 /opt/conda/lib/python3.8/site-packages/monai/utils/jupyter_utils.py in plot_engine_status(engine, logger, title, yscale, avg_keys, window_fraction, image_fn, fig, selected_inst)
03:07:06 209
03:07:06 210 if isinstance(src, dict):
03:07:06 --> 211 for k, v in src.items():
03:07:06 212 if isinstance(v, torch.Tensor) and v.ndim >= 4:
03:07:06 213 image = image_fn(k, v[batch_selected_inst])
03:07:06
03:07:06 RuntimeError: dictionary changed size during iteration