diff --git a/deepgrow/ignite/inference.ipynb b/deepgrow/ignite/inference.ipynb index 8cb376280e..077ac69db5 100644 --- a/deepgrow/ignite/inference.ipynb +++ b/deepgrow/ignite/inference.ipynb @@ -25,7 +25,7 @@ "metadata": {}, "outputs": [], "source": [ - "!python -c \"import monai\" || pip install -q \"monai-weekly[gdown, tqdm]\"" + "!python -c \"import monai\" || pip install -q \"monai-weekly[tqdm]\"" ] }, { @@ -34,13 +34,13 @@ "metadata": {}, "outputs": [], "source": [ - "import gdown\n", "import os\n", "import matplotlib.pyplot as plt\n", "import numpy as np\n", "import torch\n", "from torch import jit\n", "\n", + "import monai\n", "from monai.apps.deepgrow.transforms import (\n", " AddGuidanceFromPointsd,\n", " AddGuidanceSignald,\n", @@ -145,16 +145,16 @@ "source": [ "# Download data and model\n", "\n", - "resource = \"https://drive.google.com/uc?id=1cIlDXWx4pEFpldoIXMEe-5JeaOxzB05Z\"\n", + "resource = \"https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/_image.nii.gz\"\n", "dst = \"_image.nii.gz\"\n", "\n", "if not os.path.exists(dst):\n", - " gdown.download(resource, dst, quiet=False)\n", + " monai.apps.download_url(resource, dst)\n", "\n", - "resource = \"https://drive.google.com/uc?id=1_J4qj-JRqQc9g8SGegq63Z_wq6gqgLLg\"\n", + "resource = \"https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/deepgrow_2d.ts\"\n", "dst = \"deepgrow_2d.ts\"\n", "if not os.path.exists(dst):\n", - " gdown.download(resource, dst, quiet=False)" + " monai.apps.download_url(resource, dst)" ] }, { diff --git a/modules/tcia_csv_processing.ipynb b/modules/tcia_csv_processing.ipynb index 7bb646e649..63879f36cd 100644 --- a/modules/tcia_csv_processing.ipynb +++ b/modules/tcia_csv_processing.ipynb @@ -244,7 +244,7 @@ ], "source": [ "dataset = TCIADataset(\n", - " url=\"https://drive.google.com/uc?id=1HQ7BZvBr1edmi8HIwdG5KBweXWms5Uzk\",\n", + " url=\"https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/ISPY1_Combined.csv\",\n", " filename=os.path.join(root_dir, \"ISPY1_Combined.csv\"),\n", " img_dir=os.path.join(root_dir, \"tcia_images\"),\n", " row_indices=[[0, 8]],\n", @@ -447,7 +447,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.10" + "version": "3.8.12" } }, "nbformat": 4,