From a9bde88b1c1e57cfca908044f44e27bc333f709c Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Tue, 2 May 2023 11:15:28 -0600 Subject: [PATCH 01/17] Create CITATION.cff --- CITATION.cff | 7 +++++++ 1 file changed, 7 insertions(+) create mode 100644 CITATION.cff diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 000000000..faea139ad --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,7 @@ +@misc{project_pythia, +author = "{Project Pythia contributors}", +title = "Project Pythia Foundations", +year = "2023", +url = "https://projectpythia.org/", +note = "[Online; accessed 01-May-2023]" +} From d6ae1ec62d9a41478107179cc887f86f5c07151b Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Tue, 2 May 2023 11:18:01 -0600 Subject: [PATCH 02/17] Update CITATION.cff --- CITATION.cff | 17 ++++++++++------- 1 file changed, 10 insertions(+), 7 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index faea139ad..0b67e5cbb 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -1,7 +1,10 @@ -@misc{project_pythia, -author = "{Project Pythia contributors}", -title = "Project Pythia Foundations", -year = "2023", -url = "https://projectpythia.org/", -note = "[Online; accessed 01-May-2023]" -} +cff-version: 2023.05.01 +message: "If you use this software, please cite it as below." +authors: + - family-names: Joe + given-names: Johnson + orcid: https://orcid.org/0000-0000-0000-0000 +title: Project Pythia Foundations: v2023.05.01 +site: ProjectPythia/pythia-foundations: v2023.05.01 +version: v2023.05.01 +date-released: 2023-05-01 From 0cf1c0418919fdbe64f0d76151806e41e7123e43 Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Tue, 2 May 2023 11:18:56 -0600 Subject: [PATCH 03/17] Update CITATION.cff --- CITATION.cff | 1 - 1 file changed, 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index 0b67e5cbb..4a59a1165 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -5,6 +5,5 @@ authors: given-names: Johnson orcid: https://orcid.org/0000-0000-0000-0000 title: Project Pythia Foundations: v2023.05.01 -site: ProjectPythia/pythia-foundations: v2023.05.01 version: v2023.05.01 date-released: 2023-05-01 From e335ae47def663c0ecc7a2e15c7ac34c61b283b8 Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Thu, 4 May 2023 11:48:01 -0600 Subject: [PATCH 04/17] add all contributors and change title --- CITATION.cff | 45 ++++++++++++++++++++++++++++++++++++++++++--- 1 file changed, 42 insertions(+), 3 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index 4a59a1165..6146126d3 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -1,9 +1,48 @@ cff-version: 2023.05.01 message: "If you use this software, please cite it as below." authors: - - family-names: Joe - given-names: Johnson + - family-names: Rose + given-names: Brian orcid: https://orcid.org/0000-0000-0000-0000 -title: Project Pythia Foundations: v2023.05.01 + - family-names: Kent + given-names: Julia + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Tyle + given-names: Kevin + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Clyne + given-names: John + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Banihirwe + given-names: Anderson + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Camron + given-names: Drew + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: May + given-names: Ryan + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Grover + given-names: Maxwell + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Ford + given-names: Ryan + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Paul + given-names: Kevin + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Morley + given-names: James + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Eroglu + given-names: Orhan + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Kailyn + given-names: Lily + orcid: https://orcid.org/0000-0000-0000-0000 + - family-names: Zacharias + given-names: Anissa + orcid: https://orcid.org/0000-0000-0000-0000 +title: "Pythia Foundations" version: v2023.05.01 date-released: 2023-05-01 From 5f6f8a0633c8812453183e5931dedd4fb476ab0d Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Thu, 4 May 2023 11:52:34 -0600 Subject: [PATCH 05/17] cff-version wrong --- CITATION.cff | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index 6146126d3..2a07c6641 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -1,4 +1,4 @@ -cff-version: 2023.05.01 +cff-version: 1.2.0 message: "If you use this software, please cite it as below." authors: - family-names: Rose @@ -26,7 +26,7 @@ authors: given-names: Maxwell orcid: https://orcid.org/0000-0000-0000-0000 - family-names: Ford - given-names: Ryan + given-names: Robert orcid: https://orcid.org/0000-0000-0000-0000 - family-names: Paul given-names: Kevin @@ -40,7 +40,7 @@ authors: - family-names: Kailyn given-names: Lily orcid: https://orcid.org/0000-0000-0000-0000 - - family-names: Zacharias + - family-names: Zacharias given-names: Anissa orcid: https://orcid.org/0000-0000-0000-0000 title: "Pythia Foundations" From 02b42af657d0e90b93d2bb5d06c8dc2fb81afa58 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu, 4 May 2023 17:53:04 +0000 Subject: [PATCH 06/17] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- CITATION.cff | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index 2a07c6641..147a739c9 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -1,5 +1,5 @@ cff-version: 1.2.0 -message: "If you use this software, please cite it as below." +message: 'If you use this software, please cite it as below.' authors: - family-names: Rose given-names: Brian @@ -43,6 +43,6 @@ authors: - family-names: Zacharias given-names: Anissa orcid: https://orcid.org/0000-0000-0000-0000 -title: "Pythia Foundations" +title: 'Pythia Foundations' version: v2023.05.01 date-released: 2023-05-01 From a83542e680f8e4d7877a751319977f804c61f93f Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Thu, 4 May 2023 14:16:31 -0600 Subject: [PATCH 07/17] Update CITATION.cff Co-authored-by: Brian Rose --- CITATION.cff | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index 147a739c9..71a955608 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -2,7 +2,7 @@ cff-version: 1.2.0 message: 'If you use this software, please cite it as below.' authors: - family-names: Rose - given-names: Brian + given-names: Brian E. J. orcid: https://orcid.org/0000-0000-0000-0000 - family-names: Kent given-names: Julia From a36a7b5b63f55a47e6fa0085ff0a70042d6ee207 Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Thu, 4 May 2023 14:22:24 -0600 Subject: [PATCH 08/17] Update CITATION.cff Co-authored-by: Brian Rose --- CITATION.cff | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index 71a955608..9be4b70a2 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -3,7 +3,7 @@ message: 'If you use this software, please cite it as below.' authors: - family-names: Rose given-names: Brian E. J. - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0002-9961-3821 - family-names: Kent given-names: Julia orcid: https://orcid.org/0000-0000-0000-0000 From 5e5166088caeea8e4f22339eccac684e6e3edfc0 Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Thu, 4 May 2023 15:19:20 -0600 Subject: [PATCH 09/17] Update CITATION.cff Co-authored-by: Robert Ford <50349951+r-ford@users.noreply.github.com> --- CITATION.cff | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index 9be4b70a2..6345ce1ad 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -26,8 +26,8 @@ authors: given-names: Maxwell orcid: https://orcid.org/0000-0000-0000-0000 - family-names: Ford - given-names: Robert - orcid: https://orcid.org/0000-0000-0000-0000 + given-names: Robert R. + orcid: https://orcid.org/0000-0001-5483-4965 - family-names: Paul given-names: Kevin orcid: https://orcid.org/0000-0000-0000-0000 From f8b9cf103539322e9f027c1815a9a2279a468214 Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Mon, 8 May 2023 12:16:30 -0600 Subject: [PATCH 10/17] Update CITATION.cff Co-authored-by: Max Grover --- CITATION.cff | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index 6345ce1ad..4584d6c6b 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -24,7 +24,7 @@ authors: orcid: https://orcid.org/0000-0000-0000-0000 - family-names: Grover given-names: Maxwell - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0002-0370-8974 - family-names: Ford given-names: Robert R. orcid: https://orcid.org/0000-0001-5483-4965 From 0ffdda3a79288a07255bda1146427f6bcc6c4dba Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Mon, 8 May 2023 12:16:38 -0600 Subject: [PATCH 11/17] Update CITATION.cff Co-authored-by: Anderson Banihirwe <13301940+andersy005@users.noreply.github.com> --- CITATION.cff | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index 4584d6c6b..6cb09979a 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -15,7 +15,7 @@ authors: orcid: https://orcid.org/0000-0000-0000-0000 - family-names: Banihirwe given-names: Anderson - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0001-6583-571X - family-names: Camron given-names: Drew orcid: https://orcid.org/0000-0000-0000-0000 From 82999280718783e9ae044877436d4b717bd7f0bd Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Mon, 8 May 2023 12:19:59 -0600 Subject: [PATCH 12/17] Update CITATION.cff with ORCIDs --- CITATION.cff | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index 6cb09979a..e8ffa6844 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -6,22 +6,22 @@ authors: orcid: https://orcid.org/0000-0002-9961-3821 - family-names: Kent given-names: Julia - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0002-5611-8986 - family-names: Tyle given-names: Kevin - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0001-5249-9665 - family-names: Clyne given-names: John - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0003-2788-9017 - family-names: Banihirwe given-names: Anderson orcid: https://orcid.org/0000-0001-6583-571X - family-names: Camron given-names: Drew - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0001-7246-6502 - family-names: May given-names: Ryan - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0003-2907-038X - family-names: Grover given-names: Maxwell orcid: https://orcid.org/0000-0002-0370-8974 From 800f708af23aeb19933ad981339d51fc2ea1c230 Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Mon, 8 May 2023 12:38:54 -0600 Subject: [PATCH 13/17] Updates from main (#394) * Mention that SST is called tos in the model (#390) * fix broken link (#393) --------- Co-authored-by: Eric Levine --- core/xarray/computation-masking.ipynb | 2 +- foundations/github/github-setup-advanced.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/core/xarray/computation-masking.ipynb b/core/xarray/computation-masking.ipynb index a48275d54..5c7467dfd 100644 --- a/core/xarray/computation-masking.ipynb +++ b/core/xarray/computation-masking.ipynb @@ -95,7 +95,7 @@ "source": [ "## Data Setup\n", "\n", - "The bulk of the examples in this tutorial make use of a single dataset. This dataset contains monthly sea surface temperature (SST) data, and is obtained from the Community Earth System Model v2 (CESM2). (For this tutorial, however, the dataset will be retrieved from the Pythia example data repository.) The following example illustrates the process of retrieving this Global Climate Model dataset:" + "The bulk of the examples in this tutorial make use of a single dataset. This dataset contains monthly sea surface temperature (SST, call 'tos' here) data, and is obtained from the Community Earth System Model v2 (CESM2). (For this tutorial, however, the dataset will be retrieved from the Pythia example data repository.) The following example illustrates the process of retrieving this Global Climate Model dataset:" ] }, { diff --git a/foundations/github/github-setup-advanced.md b/foundations/github/github-setup-advanced.md index 5c68bed21..e66244637 100644 --- a/foundations/github/github-setup-advanced.md +++ b/foundations/github/github-setup-advanced.md @@ -190,4 +190,4 @@ In the next section, we will learn the basics of version control using command-l 1. [GitHub Personal Access Token (https)](https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/creating-a-personal-access-token) 1. [GitHub Public/Private Keypair (ssh)](https://docs.github.com/en/github/authenticating-to-github/connecting-to-github-with-ssh) -1. [Remotes in GitHub (Carpentries Tutorial)](https://swcarpentry.github.io/git-novice/07-github/index.html) +1. [Remotes in GitHub (Carpentries Tutorial)](https://swcarpentry.github.io/git-novice/07-github.html) From e3c757abb1618ed8d059a8d9d16a72275ade9c9c Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Mon, 8 May 2023 13:53:00 -0600 Subject: [PATCH 14/17] more orcids --- CITATION.cff | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index e8ffa6844..62a9abe87 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -36,13 +36,13 @@ authors: orcid: https://orcid.org/0000-0000-0000-0000 - family-names: Eroglu given-names: Orhan - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0003-3099-8775 - family-names: Kailyn given-names: Lily orcid: https://orcid.org/0000-0000-0000-0000 - family-names: Zacharias given-names: Anissa - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0002-2666-8493 title: 'Pythia Foundations' version: v2023.05.01 date-released: 2023-05-01 From 40af073c42b51be028f42c30c83d93ecfeb9a12d Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Mon, 8 May 2023 14:07:08 -0600 Subject: [PATCH 15/17] kpaul orcid --- CITATION.cff | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index 62a9abe87..8df9eb117 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -30,7 +30,7 @@ authors: orcid: https://orcid.org/0000-0001-5483-4965 - family-names: Paul given-names: Kevin - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0000-0001-8155-8038 - family-names: Morley given-names: James orcid: https://orcid.org/0000-0000-0000-0000 From dea8fcf2de801c633eb559fdf7fc2a55b07936e4 Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Mon, 8 May 2023 15:30:11 -0600 Subject: [PATCH 16/17] one more orcid --- CITATION.cff | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index 8df9eb117..b3080d540 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -33,7 +33,7 @@ authors: orcid: https://orcid.org/0000-0001-8155-8038 - family-names: Morley given-names: James - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0009-0005-5193-7981 - family-names: Eroglu given-names: Orhan orcid: https://orcid.org/0000-0003-3099-8775 From 5abf756c5d0e4adef5ba5f0bb58da6b298b10ee6 Mon Sep 17 00:00:00 2001 From: Julia Kent <46687291+jukent@users.noreply.github.com> Date: Mon, 22 May 2023 13:16:17 -0600 Subject: [PATCH 17/17] added final orcid --- CITATION.cff | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CITATION.cff b/CITATION.cff index b3080d540..9e96e8edf 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -39,7 +39,7 @@ authors: orcid: https://orcid.org/0000-0003-3099-8775 - family-names: Kailyn given-names: Lily - orcid: https://orcid.org/0000-0000-0000-0000 + orcid: https://orcid.org/0009-0002-0125-5091 - family-names: Zacharias given-names: Anissa orcid: https://orcid.org/0000-0002-2666-8493