From 17a9baf4b9850f4a7f583ff5dd3cc8c9ff25cabc Mon Sep 17 00:00:00 2001 From: Simon Potter Date: Mon, 25 Mar 2019 09:09:51 +0000 Subject: [PATCH] fixed some text --- docs/api.rst | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/docs/api.rst b/docs/api.rst index aca2815..0cc2fad 100644 --- a/docs/api.rst +++ b/docs/api.rst @@ -197,6 +197,8 @@ Example:: curl -H 'Expect:' -H 'Accept:text/xml' https://www.ebi.ac.uk/Tools/hmmer/annotation/phobius/4162F712-1DD2-11B2-B17E-C09EFE1DC403 +.. _api-results: + Results ^^^^^^^ @@ -373,13 +375,14 @@ In this case we want to fetch the first two hits, with their alignments as a tex Downloading files from batch searches ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -For batch searches, it is unfortunately not possible to download files -for all sequences in a single request. A single combined output might make +For batch searches, it is not possible to download results +for all individual query sequences in a single request. +A single combined output might make sense for some formats (e.g. tsv), but not others (such as an alignment). The results of each search need to be downloaded individually. The summary page may be requested as json or xml to make it easier to -parse the list of individual:: +obtain the list of individual search IDs:: curl -H 'Accept: application/json' 'https://www.ebi.ac.uk/Tools/hmmer/results/A67B56FE-CA07-11E7-A02C-F964E976C163/score'