index.qmd

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title: "Home"
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ProteomicsML provides ready-made datasets for machine learning models accompanied by
tutorials on how to work with even the most complex data types in the field of
proteomics. The resource is set up to evolve together with the field, and we welcome
everyone to contribute to the project by adding new datasets and accompanying notebooks.

ProteomicsML was set up as a joint effort of [SDU][sdu], [CompOmics][compomics],
[LUMC][lumc], [PeptideAtlas][peptideatlas], [NIST][nist], [PRIDE][pride],
and [MSAID][msaid]. We believe that ProteomicsML is solid step forward for the field towards
more open and reproducible science!

Want to learn more about the project? [Read our publication](publication.html):

>**ProteomicsML: An Online Platform for Community-Curated Data Sets and Tutorials for Machine Learning in Proteomics**.<br>
>Tobias G. Rehfeldt\*, Ralf Gabriels\*, Robbin Bouwmeester\*, Siegfried Gessulat, Benjamin A. Neely, Magnus Palmblad, Yasset Perez-Riverol, Tobias Schmidt, Juan Antonio Vizcaı́no^§^, and Eric W. Deutsch^§^.<br>
>J. Proteome Res. 2023, 22, 2, 632–636. [doi:10.1021/acs.jproteome.2c00629](https://doi.org/10.1021/acs.jproteome.2c00629).



[sdu]: https://www.sdu.dk/
[compomics]: https://compomics.com
[lumc]: https://www.lumc.nl/?setlanguage=English&setcountry=en
[peptideatlas]:  http://www.peptideatlas.org/
[nist]: https://www.nist.gov/
[pride]: https://www.ebi.ac.uk/pride/
[msaid]: https://www.msaid.de/

**Learn**<br>
📒 Explore all [tutorials][tutorials] and [datasets][datasets]<br>
🙏 Ask or answer questions about the tutorials in [Tutorials Q&A][tutorials-qa]<br>
📒 [Background resources][background-resources] for learning about proteomics and glycoproteomics<br>

**Discuss**<br>
📄 Discuss the existing datasets or the addition of a new dataset in [Dataset Discussions][dataset-discussions]<br>
💬 Join the ProteomicsML [General Discussions][general-discussions]<br>

**Contribute**<br>
💡 Have an idea on how to improve the project? [Open an issue][open-issue]<br>
🧑‍🔧 Learn how to [Contribute][contributing]<br>
🤝 Read the [Code of Conduct][code-of-conduct]<br>

[tutorials]: /tutorials
[datasets]: /datasets
[tutorials-qa]: https://github.com/ProteomicsML/ProteomicsML/discussions/categories/tutorials-q-a
[background-resources]: /background_resources.html
[dataset-discussions]: https://github.com/ProteomicsML/ProteomicsML/discussions/categories/dataset-discussions
[general-discussions]: https://github.com/ProteomicsML/ProteomicsML/discussions/categories/general
[open-issue]: https://github.com/ProteomicsML/ProteomicsML/issues
[contributing]: https://www.proteomicsml.org/contributing.html
[code-of-conduct]: https://www.proteomicsml.org/code-of-conduct.html