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DOC: reference MDP and scikit-learn, use link_names to avoid double d…

…efinitions etc
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commit fbba1d5fba9b749737789a6a2d3cc770a3fb20e1 1 parent ef18bbd
Yaroslav Halchenko yarikoptic authored
25 doc/source/contributors.txt
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@@ -52,23 +52,22 @@ Acknowledgements
We are greatful to the developers and contributers of NumPy_, SciPy_ and
IPython_ for providing an excellent Python-based computing environment.
-Additionally, as PyMVPA makes use of a lot of external software packages (e.g.
-classifier implementations), we want to acknowledge the authors of the
-respective tools and libraries (e.g. LIBSVM_ or Shogun_) and thank them for
-developing their packages as free and open source software.
+Additionally, as PyMVPA makes use of a lot of external software
+packages (e.g. classifier implementations), we want to acknowledge
+the authors of the respective tools and libraries (e.g. LIBSVM_, MDP_,
+scikit-learn_, Shogun_) and thank them for developing their packages
+as free and open source software.
-Finally, we would like to express our acknowledgements to the `Debian project`_
-for providing us with hosting facilities for mailing lists and source code
-repositories. But most of all for developing the *universal operating system*.
+Finally, we would like to express our acknowledgements to the `Debian
+project`_ for providing us with hosting facilities for mailing lists
+and source code repositories. But most of all for developing the
+*universal operating system*.
.. Please add some notes when you think that you should give credits to someone
that enables or motivates you to work on PyMVPA ;-)
-.. _Debian project: http://www.debian.org
-.. _SciPy: http://www.scipy.org/
-.. _Shogun: http://www.shogun-toolbox.org
-.. _IPython: http://ipython.scipy.org
-.. _LIBSVM: http://www.csie.ntu.edu.tw/~cjlin/libsvm/
+.. include:: link_names.txt
+
Grant support
-------------
@@ -84,6 +83,8 @@ German Federal Ministry of Education and Research
German Academic Exchange Service
* PPP-USA D/05/504/7
+McDonnel Foundation
+
US National Institutes of Mental Health
* 5R01MH075706
* F32MH085433-01A1
17 doc/source/index.rst
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@@ -106,7 +106,7 @@ How to cite PyMVPA
.. include:: howtocite.txt
-
+.. contributors.txt also would include link_names.txt
.. include:: contributors.txt
@@ -162,21 +162,6 @@ here.
*PyMVPA can optionally use implementations of Support Vector Machines from
Shogun.*
-.. _3dsvm: http://afni.nimh.nih.gov/pub/dist/doc/program_help/3dsvm.html
-.. _AFNI: http://afni.nimh.nih.gov/
-.. _Elefant: http://elefant.developer.nicta.com.au
-.. _Shogun: http://www.fml.tuebingen.mpg.de/raetsch/projects/shogun
-.. _Orange: http://magix.fri.uni-lj.si/orange
-.. _PyML: http://pyml.sourceforge.net
-.. _MDP: http://mdp-toolkit.sourceforge.net
-.. _MVPA Toolbox: http://www.csbmb.princeton.edu/mvpa/
-.. _NiPy: http://neuroimaging.scipy.org
-.. _PROBID: http://www.brainmap.co.uk/probid.htm
-.. _PyMGH/PyFSIO: http://code.google.com/p/pyfsio
-.. _PyNIfTI: http://niftilib.sourceforge.net/pynifti
-.. _OpenMEEG: http://openmeeg.gforge.inria.fr
-.. _scikit-learn: http://scikit-learn.org
-
.. toctree::
:hidden:
4 doc/source/intro.rst
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@@ -26,8 +26,6 @@ come.
PyMVPA stands for *Multivariate Pattern Analysis* in Python_.
-.. _Python: http://www.python.org
-
What this Manual is NOT
=======================
@@ -142,7 +140,6 @@ the mighty NumPy_ package made it easy to support data of any dimensionality.
Therefore PyMVPA can easily be used with 4d fMRI dataset, but equally well
with EEG/MEG data (3d) or even non-neuroimaging datasets.
-.. _NumPy: http://numpy.scipy.org/
.. index:: NIfTI
By September 2007 PyMVPA included support for reading and writing datasets
@@ -173,3 +170,4 @@ How to cite PyMVPA
.. include:: contributors.txt
+.. include:: link_names.txt
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