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Commits on Apr 25, 2016
  1. @yarikoptic

    Merge pull request #445 from mvdoc/lassoregr

    yarikoptic committed Apr 25, 2016
    ENH,TST: add rsa.Regression measure with tests + small fix on typos [reopens #420]
  2. @mvdoc

    Merge remote-tracking branch 'origin/master' into lassoregr

    mvdoc committed Apr 25, 2016
    * origin/master: (117 commits)
      ENH: fixed up tests - now adhoc sl should work just fine with CustomPartitioner
      ENH: simplify SplitRFE doc example to nore require errorfx + reorder mappers to have mean(abs(normed)))
      BF: reduce required ACC while testing auc -- ran 100 times without failure
      BF: two tests must be skipped if hdf5 is NA
      DOC: Changed volume geometry warning to print dataset instead of dumping it on console
      minor change as per @nno's suggestion
      OPT: show only summary of representation of internal _src2aux of VolumeMaskDictionary object, as the full output may result in a significant slow-down of the __repr__ method
      DOC: update matrix plot range to clear confusion, and fixed a few typos
      ENH: made tests less stringent and some PEP8 cleanup
      Added a case to test to show it fails for certain cases which will be fixed by this commit
      BF: This handles surface-to-voxel queryengines where setting center seed is not meaningful
      BF: initializing wrong shapes of mappers_full in featselhyper
      BF: making featsel param when given as proportion to behave as intended
      ENH: use "super" when calling __init__ in pdist-related Measures
      BF: changing default nblocks to None
      ENH: Minor change to let the algorithm use nblocks even for nproc=1
      DOC: rudimentary docstring for FeatureSelectionHyperalignment pointing to SearchlightHyperalignment
      Added reference to the paper into ChangeLog
      RF: HyperalignmentMeasure -> FeatureSelectionHyperalignment + minor cleanup
      Fixed typo
      ...
  3. @yarikoptic

    Merge branch 'pr-452'

    yarikoptic committed Apr 25, 2016
    * pr-452:
      BF: Fixing hyperalignment example so that it doesn't crash without lapack library
  4. @yarikoptic

    Merge branch 'master' into pr-272

    yarikoptic committed Apr 25, 2016
    * master: (107 commits)
      ENH: simplify SplitRFE doc example to nore require errorfx + reorder mappers to have mean(abs(normed)))
      BF: reduce required ACC while testing auc -- ran 100 times without failure
      BF: two tests must be skipped if hdf5 is NA
      DOC: Changed volume geometry warning to print dataset instead of dumping it on console
      minor change as per @nno's suggestion
      OPT: show only summary of representation of internal _src2aux of VolumeMaskDictionary object, as the full output may result in a significant slow-down of the __repr__ method
      DOC: update matrix plot range to clear confusion, and fixed a few typos
      ENH: made tests less stringent and some PEP8 cleanup
      Added a case to test to show it fails for certain cases which will be fixed by this commit
      BF: This handles surface-to-voxel queryengines where setting center seed is not meaningful
      BF: initializing wrong shapes of mappers_full in featselhyper
      BF: making featsel param when given as proportion to behave as intended
      ENH: use "super" when calling __init__ in pdist-related Measures
      BF: changing default nblocks to None
      ENH: Minor change to let the algorithm use nblocks even for nproc=1
      DOC: rudimentary docstring for FeatureSelectionHyperalignment pointing to SearchlightHyperalignment
      Added reference to the paper into ChangeLog
      RF: HyperalignmentMeasure -> FeatureSelectionHyperalignment + minor cleanup
      Fixed typo
      DOC: added brief changelog entry for slhyper, aiming for 2.5.0 release
      ...
  5. @yarikoptic

    ENH: fixed up tests - now adhoc sl should work just fine with CustomP…

    yarikoptic committed Apr 25, 2016
    …artitioner
    
    added also an assert for our assumption of having 1d indices in the dataset
Commits on Apr 19, 2016
  1. @yarikoptic

    Merge pull request #467 from yarikoptic/bf/splitrfe-docsetc

    yarikoptic committed Apr 19, 2016
    ENH: simplify SplitRFE doc example to nore require errorfx + reorder mappers
  2. @yarikoptic

    ENH: simplify SplitRFE doc example to nore require errorfx + reorder …

    yarikoptic committed Apr 19, 2016
    …mappers to have mean(abs(normed)))
    
    Closes #459
    Closes #460
  3. @yarikoptic

    Merge pull request #466 from yarikoptic/bf-labile

    yarikoptic committed Apr 19, 2016
    BF: reduce required ACC while testing auc -- ran 100 times without failure
Commits on Apr 18, 2016
  1. @yarikoptic
  2. @nno

    Merge pull request #450 from swaroopgj/surfringqe

    nno committed Apr 18, 2016
    NF: Adds SurfaceRingQueryEngine for surfaces similar to HollowSphere
Commits on Apr 16, 2016
  1. @yarikoptic
Commits on Apr 14, 2016
  1. @nno

    Merge pull request #465 from swaroopgj/volgmwarningfix

    nno committed Apr 14, 2016
    ENH: Changed volume geometry warning to print dataset instead of dumping the dataset
  2. @swaroopgj
Commits on Apr 13, 2016
  1. @yarikoptic

    Merge pull request #454 from nno/_enh/pdist_init_super

    yarikoptic committed Apr 13, 2016
    ENH: use "super" when calling __init__ in pdist-related Measures
  2. @yarikoptic

    Merge pull request #458 from swaroopgj/featselfix

    yarikoptic committed Apr 13, 2016
    Few bug fixes to handle feature selection, roi_seed, and datasets with different features
  3. @yarikoptic

    Merge pull request #461 from swaroopgj/rsaexamplefix

    yarikoptic committed Apr 13, 2016
    DOC: update matrix plot range to clear confusion, and fixed a few typos
  4. @yarikoptic

    Merge pull request #462 from nno/_opt/faster_volume_mask_dict_repr

    yarikoptic committed Apr 13, 2016
    OPT: show only summary of representation of internal _src2aux
Commits on Apr 12, 2016
  1. @swaroopgj
  2. @nno

    OPT: show only summary of representation of internal _src2aux of Volu…

    nno committed Apr 12, 2016
    …meMaskDictionary object, as the full output may result in a significant slow-down of the __repr__ method
  3. @swaroopgj
  4. @swaroopgj
  5. @swaroopgj

    Added a case to test to show it fails for certain cases which will be…

    swaroopgj committed Apr 11, 2016
    … fixed by this commit
  6. @swaroopgj

    BF: This handles surface-to-voxel queryengines where setting center s…

    swaroopgj committed Apr 11, 2016
    …eed is not meaningful
Commits on Apr 11, 2016
  1. @swaroopgj
  2. @swaroopgj
Commits on Apr 10, 2016
  1. @nno
Commits on Apr 9, 2016
  1. @yarikoptic

    Merge pull request #438 from swaroopgj/slhyper

    yarikoptic committed Apr 9, 2016
    NF: Adding SearchlightHyperalignment
  2. @swaroopgj
  3. @swaroopgj
Commits on Apr 8, 2016
  1. @swaroopgj

    Merge pull request #7 from yarikoptic/slhyper

    swaroopgj committed Apr 8, 2016
    HyperalignmentMeasure -> FeatureSelectionHyperalignment + ref citation in ChangeLog
  2. @yarikoptic

    DOC: rudimentary docstring for FeatureSelectionHyperalignment pointin…

    yarikoptic committed Apr 8, 2016
    …g to SearchlightHyperalignment
  3. @yarikoptic
  4. @yarikoptic

    RF: HyperalignmentMeasure -> FeatureSelectionHyperalignment + minor c…

    yarikoptic committed Apr 8, 2016
    …leanup
    
    Also as a result does not return now a Dataset with projections embedded into
    .samples of the dataset... just returns projections
  5. @swaroopgj

    Fixed typo

    swaroopgj committed Apr 8, 2016
Commits on Apr 6, 2016
  1. @swaroopgj

    Merge pull request #6 from yarikoptic/slhyper

    swaroopgj committed Apr 6, 2016
    tune up of the hyperaglinment example + merge of master + adding citation/reference for slhyper paper
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