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Pre-release

@bchen4 bchen4 released this Nov 20, 2014 · 16 commits to master since this release

Attempts to make use of control data

  • If provided, the mutation rate in the control data will be used as background for looking for reliable mutations.
  • You can use "-t" to specify control data.
  • Not fully tested.
Assets 2

@bchen4 bchen4 released this Nov 3, 2014 · 18 commits to master since this release

  • Fixed clustering bug
  • Fixed file name bug
  • Reduced memory use
Assets 2

@bchen4 bchen4 released this Oct 8, 2014

  • Bug fix in finding mutations
  • Update R code with error control
Assets 2

@bchen4 bchen4 released this Sep 25, 2014 · 25 commits to master since this release

  • Allow ZTNB to use default setting to do regression
  • Revised typos
Assets 2

@bchen4 bchen4 released this Sep 23, 2014 · 30 commits to master since this release

Code re-structure and bug fixes.

  • Fixed bugs in finding mutations when there are multiple consecutive insertions;
  • Added more options for startcoef for zero-truncated negative binomial regression to make sure program can converge;
  • Modified the algorithm to count coverage for each mutation site, improved speed;
  • Replace bar charts with log file;
Assets 2
Sep 16, 2014
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