No description or website provided.
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Failed to load latest commit information.


Tools to go from a DICOM dataset into a collection of tables for the purposes of data repurposing and exploration using relational databases.

This is not a general purpose tool. Initial goal is to support exploration of the TCIA QIN-HEADNECK dataset.



  • python
  • pandas
  • pydicom (must be installed from source! distribution available via pip is too old and does not have some of the DICOM dictionary entries we parse)
  • dcmqi is required to generate certain object-specific tables for such objects as DICOM Segmentations and measurements structured reports; it is best if you make sure dcmqi converters are in your path prior to running the script



python -s schema.qdbd -d <location of a directory with DICOM data> -o <output location to store csv tables>

The script will create tables stored in CSV in the directory where it was executed.