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HiVis: a software built on electron for hierarchical visualization and analysis of interaction networks
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README.md

HiVis

A software built on electron for hierarchical visualization and analysis of interaction networks.

Usage

Currently, we offer installation packages for linux, windows and mac operating systems. For linux user, download the hivis-linux-x64, execute the hivis. For win32 user, download the hivis-win32-x64, execute the hivis.exe. For mas user, download the hivis-mas-x64, execute the hivis. You can load the demo1.txt file into HiVis to see how it works.

Since there are numerous operating systems exist and each system has many versions, so if we don't provide a installation package for your operating system or you encounter some errors when using the mas, win32 or linux installation package, you can still build HiVis yourself by following Installation.

Installation

First you have to install electron, you can choose to install it as a development dependency in your app:

npm install electron --save-dev

or you can install the electron command globally in your $PATH:

npm install electron -g

then install electron-forge which is a complete tool for building modern electron applications.

npm install -g electron-forge
electron-forge init HiVis
cd HiVis

then replace the src folder with src

then

electron-forge start

You can load the demo1.txt file into HiVis to see how it works.

Input file format

The input file should obey the following format:

element1 element2 value 
element1 element3 value 
element2 element1 value 
element3 element1 value ...

You can consult demo1.txt as an example.

Download features

By clicking save.file, you can get can get a file with all the elements listed in your chosen cluster. So you can do further analysis such as gene ontology analysis. Also, by clicking save.svg you can get a svg file of your current view.

License

MIT

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