• Emergent sub-population behavior uncovered with a community dynamic metabolic model of Escherichia coli diauxic growth

    Python 3 GPL-3.0 Updated Dec 4, 2018
  • Computational model of photosynthesis resulted from a merge of two previously published mathematical models of relevant subprocesses

    Jupyter Notebook Updated Nov 23, 2018
  • Reconstruction of the mathematical model of the photosynthetic electron transport chain using modelbase package

    Jupyter Notebook Updated Oct 13, 2018
  • Aa free expandable Python package for building and analysing dynamic mathematical models of biological systems.

    Jupyter Notebook GPL-3.0 Updated Aug 29, 2018
  • Labeling in the non-oxidative pentose phosphate pathway using modelbase

    Python GPL-3.0 Updated Aug 23, 2018
  • Modelbase implementation of the Poolman 2000 variant of the 1988 Pettersson CBB cycle model

    Jupyter Notebook Updated Aug 20, 2018
  • TeX GPL-3.0 Updated Apr 5, 2018
  • ODE model for P. tricornutum associated microbial community, can be generalized to any system

    Python GPL-3.0 Updated Nov 28, 2017
  • Pipeline to process 16S (V6) sequence data coming from Ion-Torrent sequencer

    Updated Sep 29, 2017
  • Non-photochemical quenching provides short-term light memory in plants: a mathematical model

    Python 1 1 Updated Mar 27, 2017
  • MATLAB files to simulate in vitro experiments of Integrase with or without Reaction Directionality Factors (RDFs)

    Matlab GPL-2.0 Updated Nov 28, 2016
  • Model files to simulate our models on histone gene expression regulation during S-phase

    C Updated Jun 6, 2016
  • Scripts by Steve Court to generate alternative network structures

    Java Updated Oct 14, 2015
  • Constraint-based model of Paenibacillus polymyxa ICGEB2008

    Python Updated Sep 15, 2015
  • Model of the photosynthetic electron transport chain for Chlamydomonas

    Python 3 1 Updated May 28, 2015

Top languages


Most used topics