Analysis pipeline for ATAC-seq Data
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Data
Fragment_length_ratio.txt
Manual_for_ATAC-pipe.pdf
README.md
atac-pipe.py
call_binding.py
chr.sh
condaEnv_atac-pipe.yml
deseq.r
fragment_ref.txt
header.sam
load_data.py
mscentipede.pxd
mscentipede.pyx
mscentipedepy.py
pyCorrPCA.py
pyMappingQC.py
pyReadCount.py
pySig.py
refDown.py
sam2perbase1bp.pl
setup.py
shift_sam_bases.pl
step1_prepare_data_files.py
step2_run_centipede.py
step3_build_clustermap.py

README.md

ATAC-pipe

Analysis pipeline for ATAC-seq Data

Please see Manual_for_ATAC-pipe.pdf