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@QuackenbushLab

QuackenbushLab

Popular repositories

  1. yarn yarn Public

    YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization

    R 13 2

  2. phoenix phoenix Public

    PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics

    Python 10 2

  3. FENRIR FENRIR Public

    RNA-seq pipeline to detect viral reads

    Shell 7 2

  4. pypanda pypanda Public

    Python implementation of PANDA and LIONESS

    Python 6 8

  5. pandaR pandaR Public

    This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/pandaR.html Bug Reports: https://support.bioconductor.org/p/new/pos…

    R 4 2

  6. matlab-panda matlab-panda Public

    MATLAB implementation of PANDA & LIONESS algorithms

    MATLAB 4 3

Repositories

Showing 10 of 14 repositories
  • DASH Public

    DASH (Domain Aware Sparsity Heuristic) is a neural network pruning strategy that leverages domain-knowledge to obtain *meaningfully sparse* models.

    Python 0 MIT 0 0 0 Updated Mar 25, 2024
  • yarn Public

    YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization

    R 13 2 5 0 Updated Mar 4, 2024
  • neural_ODE Public

    project: replacing the use of RNNs in gene-regulatory network prediction, with ODEs.

    Python 2 2 0 0 Updated Mar 1, 2024
  • cobra-experiments Public
    R 3 MIT 0 0 0 Updated Jan 16, 2024
  • phoenix Public

    PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics

    Python 10 2 1 0 Updated Dec 20, 2023
  • grand Public

    GRAND database of gene regulatory networks.

    JavaScript 4 2 2 0 Updated Dec 9, 2023
  • gpuzoo Public

    Benchmarks of the gpuZoo implementations.

    MATLAB 0 GPL-3.0 0 0 0 Updated Mar 10, 2022
  • MONSTER Public
    R 2 2 0 0 Updated Oct 15, 2020
  • FENRIR Public

    RNA-seq pipeline to detect viral reads

    Shell 7 2 0 0 Updated Apr 14, 2020
  • pypanda Public

    Python implementation of PANDA and LIONESS

    Python 6 8 0 0 Updated Nov 7, 2019
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