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Open Source Checklist #140

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atruskie opened this Issue Dec 5, 2017 · 2 comments

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atruskie commented Dec 5, 2017

We intend for this project to be released as an open source project.
There are a few things we have to complete before this becomes a reality:

  • Basic approval
    • ✔️ Paul has said we can do this
  • Intellectual property
    • Clear open sourcing with QUT Bluebox
    • Check IP of any student code
    • Choose an open source lisence
      • Dual licence - code before open source commit should have a restricted licence
  • Code removal and cleanup
    • Remove dev methods (See #134 )
    • Do a full backup of the repository
    • Fix as many warnings as possible
    • Remove uneeded projects
      • Dong.Felt
      • QutBioacoustics.Xie
      • AudioBrowser
      • FSharp.FELT.*
    • Remove old/dead code
    • Clear Sandpit.cs
    • Search for any remove any reference to absolute paths (e.g. C:\..)
    • Remove most of the MATLAB code (keep stuff for AED, remove anything done by students)
    • Remove all RCode
    • Investigate reducing size of repo
      • git-filter branch Extra-assemblies
    • Reorganize folders (src, test etc...)
    • Fix old dependencies
      • Dynamic yaml (See #119)
      • PowerArgs (See #145)
  • Other
    • Add a scripts folder that has demos of common scripts
    • Add/enhance our basic documentation - See #130
    • Add a standard citation for the software (in README.md and printed in logs)
    • [ ] Add analysis specific citations See #149
    • Update GitHub issue template and contributing guide
    • [ ] Add app metrics #150
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atruskie commented Jan 16, 2018

From @towsey (QutEcoacoustics/Ecoacoustics#197):

Removal of obsolete classes from the AudioAnalysis solution.

The following classes have the potential to be removed from AnalysisPrograms. There may be unintended consequences that require, for example, the moving of single methods to another class etc.
There may be other classes that could be removed - I have only indicated those which I have worked on.

  • CanetoadOld_OBSOLETE.cs
  • Crow.cs
  • Dong.Felt.Main.cs
  • DrawEasyImage.cs
  • EPR.cs
  • FeltTemplate_Create.cs
  • FeltTemplate_Edit.cs
  • FeltTemplates_Use.cs
  • FrogRibit_OBSOLETE.cs
  • Frogs_OBSOLETE.cs
  • GratingDetection_OBSOLETE.cs
  • HerveGlotinCollaboration.cs
  • Human1.cs
  • LewinsRail3OBSOLETE.cs
  • LimnodynastesConvex_OBSOLETE.cs
  • LitoriaFallax_OBSOLETE.cs
  • PlanesTrainsAndAutomobiles.cs
  • Rain_OBSOLETE.cs
  • RheobatrachusSilus.cs
  • SPR_OBSOLETE.cs
  • SURFAnalysis.cs
  • XiesAnalysis.cs

Some classes in other folders that can likely be removed.

  • /Recognizers/CriniaTinnula_OBSOLETE.cs
  • /AnalysisConfigFiles/Towsey.MultiAnalyser.OBSOLETE.yml
  • /AudioAnalysisTools/BirdClefExperiment1.cs
  • /AudioAnalysisTools/FrommoltProject.cs
  • /AudioAnalysisTools/SURFFeatures.cs
  • /AudioAnalysisTools/DSP/AudioSegmentationOBSOLETE.cs
  • /AudioAnalysis/Dong.Felt
  • /AudioAnalysis/TowseyLibrary/Gratings.cs

atruskie added a commit that referenced this issue Jan 27, 2018

Clean up Obsolete code
This is work for the open source release (see #140)

Remove obsolete classes and clean up others keeping only core
funcionality. Still retain Sandpit class

More clean up and resharper work

atruskie added a commit that referenced this issue Jan 27, 2018

Open source release, code and binary cleanup
This commit deletes all Matlab, RCode, and most importantly
all the binaries from the ExtraAssemblies directory.

This commit will be used as the basis for cleaning out binary files
in the open source release. See #140 (https://github.com/QutBioacoustics/audio-analysis/issues/140)

There is more code to delete but nearly all the files that need
to be **cleaned** are removed in this commit.

Please note: we have internal backups of this repository as well
as an online backup here at https://github.com/QutBioacoustics/audio-analysis-archive

 Please enter the commit message for your changes. Lines starting
 with '#' will be ignored, and an empty message aborts the commit.

 On branch master
 Your branch is up to date with 'origin/master'.

 Changes to be committed:
	deleted:    AudioAnalysis/AED/Test/matlab/BAC2_20071015-045040.wav
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	deleted:    AudioAnalysis/Matlab/EPR/Ground Parrot/GParrots_JB2_20090607-173000.wav_minute_3.wav_Intensity_Thresh_3dB_Small_area_thresh_max_100_template72.mat
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	deleted:    AudioAnalysis/Matlab/EPR/Ground Parrot/GParrots_JB2_20090607-173000.wav_minute_8.wav_Intensity_Thresh_6dB_Small_area_thresh_max_100_template52.mat
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atruskie added a commit that referenced this issue Jan 30, 2018

Clean up Obsolete code
This is work for the open source release (see #140)
Remove obsolete classes and clean up others keeping only core
funcionality. Still retain Sandpit class
More clean up and resharper work
Original hash: 88715b7

atruskie added a commit that referenced this issue Feb 2, 2018

Improved layout of files for open source release
The directories and files are mostly organized now according to de facto standard for organizing code. This work is completed partially for #140

Please note: this is not a functional commit. It in no way is buildable.

atruskie added a commit that referenced this issue Feb 2, 2018

Removes obsolete projects
This commit removes obsolete projects. The projects removed:

- AudioBrowser was a GUI developed for viewing LDFC spectrograms but is now unmaintained
- Dong.Felt is code that belonged to Xueyan Dong. Relvant code, mainly calculation of ridges, has been previously ported.
- QutBioacosutics.Xie is code that belonged to Jie Xie. It is not clear whether this code has been reused, but it is unmaintained.
- FELT/* projects were code created by Anthony Truskinger. The code is no longer functional and since being written has been superseeded by better techniques

All the code deleted here has been backed up in the archive copy of audio-analysis.

This is work done for #140 - open sourcing our code. This commit is non-buildable.

@atruskie atruskie added this to the Open Source milestone Feb 2, 2018

atruskie added a commit that referenced this issue Feb 15, 2018

Fixes (most of) the unit tests
The work done in 864f7a4 to reorganize the solution for our open source release (see #140) was left incomplete because various dependencies needed to be replaced.

This commit fixes nearly all tests (with the exception of one test which is now detailed in #146).

This commit also:
- Replaces our chosen cloning library (GerorgeCloney) with a newer one that can clone `FileInfo`s via reflection
- Fixes a bug from 72aab48 where `FrequencyScaleType` property did not match the name used in the config files
- The changed FFT calculation produced very very small changes in anything that depends on the FFT. I either recalculated our expected binary matrices, or for most failing cases added a delta threshold to the comparison. I found 1E-9 was plenty of delta and three orders of magnitude smaller than any change we could notice
- I adjusted the build to ensure audio tools are copied to test output

atruskie added a commit that referenced this issue Feb 15, 2018

Repairs F# unit tests
The F# unit tests were broken in 864f7a4. This commit ensures they work again.

Work for #140

atruskie added a commit that referenced this issue Feb 17, 2018

Mass style guide application
I went through and applied as many automatic rules as I could. Work for #140

atruskie added a commit that referenced this issue Feb 17, 2018

Adds an open source license to the repo
Also cleans up the main README a bit.

Work done for #140

atruskie added a commit that referenced this issue Mar 1, 2018

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atruskie commented Mar 5, 2018

This was finally completed in 6ea3cbb

@atruskie atruskie closed this Mar 5, 2018

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