RLumDocker
Docker images providing RStudio Server and the R package ‘Luminescence’
Docker Containers
| Image | Subfolder | Size | Build type | Metrics | Run image |
|---|---|---|---|---|---|
| rlum/core | core |  |
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docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/core |
| rlum/stable | stable |  |
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docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/stable |
| rlum/dev | dev |  |
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docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/dev |
| rlum/archive | archive |  |
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docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:<version> |
| rlum/drac | drac |  |
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docker run -d -p 80:80 rlum/drac:<version> |
Image content
The base image rlum/core builds on top of rocker/rstudio:latest
(see the ‘rocker’-project by D. Eddelbuettel and C.
Boettiger) with additional
installs of:
- JAGS
- rgl
- devtools
- ggplot2
- tidyverse
- rmarkdown
rlum/stable contains the following packages currently available on
CRAN:
- Luminescence
- RLumModel
- RLumShiny
rlum/dev installs the latest development versions of these packages
via devtools::install_github() from the following repositories:
- <R-Lum/Luminescence@dev_x.x.x>
- <R-Lum/RLumModel@dev_x.x>
- tzerk/RLumShiny@master
rlum/archive provides static Docker images for each release version of
the R package ‘Luminescence’. See the table below for all available
images.
Dose Rate and Age Calculator (DRAC) images
This repository also includes Dockerfiles to create docker images
running an Apache server with PHP 7.0
that hosts DRAC.
Pre-made images are available
here and can be run using docker run -d -p 80:80 rlum/drac:<version> (replace <version> with any of
the tags listed here). Once
the container has been started open your browser and open
http://localhost/.
Quick usage guide
Install docker
Please follow one of the following guides depending on your OS:
Run container
First, make sure that Docker has been successfully installed and that the Docker service is running. In your preferred command-line interface (bash, CMD, powershell, …) type in:
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/stable:latest
This command will automatically download (only once) and run the docker
image that includes RStudio with the R packages ‘Luminescence’,
‘RLumModel’ and ‘RLumShiny’ pre-installed. The -d (or --detach)
flag tells Docker to run the container in the background. With
-p 8787:8787 we further specify the port on which RStudio Server
listens to and with -e PASSWORD=yourpassword we set a password for the
user RStudio (required). The service should start immediately. The
RStudio interface is then available on http://localhost:8787.
rlum/stable:latest refers to the username (rlum), repository
(stable) and image tag (latest). If you want to use an older version
of ‘Luminescence’ located in the archive repository use
e.g. rlum/archive:0.4.4.
Stop container
Copy and run the following line in the shell (this does not work in windows CMD!):
docker stop $(docker ps -a -q)
Dependency graph
Archived version
Version 0.1.x
| Version | Size | Pull image | Run image |
|---|---|---|---|
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docker pull rlum/archive:0.1.7 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.1.7 |
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docker pull rlum/archive:0.1.8 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.1.8 |
Version 0.2.x
| Version | Size | Pull image | Run image |
|---|---|---|---|
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docker pull rlum/archive:0.2.0 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.2.0 |
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docker pull rlum/archive:0.2.1 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.2.1 |
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docker pull rlum/archive:0.2.2 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.2.2 |
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docker pull rlum/archive:0.2.3 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.2.3 |
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docker pull rlum/archive:0.2.4 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.2.4 |
Version 0.3.x
| Version | Size | Pull image | Run image |
|---|---|---|---|
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docker pull rlum/archive:0.3.0 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.3.0 |
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docker pull rlum/archive:0.3.1 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.3.1 |
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docker pull rlum/archive:0.3.2 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.3.2 |
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docker pull rlum/archive:0.3.3 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.3.3 |
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docker pull rlum/archive:0.3.4 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.3.4 |
Version 0.4.x
| Version | Size | Pull image | Run image |
|---|---|---|---|
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docker pull rlum/archive:0.4.0 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.4.0 |
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docker pull rlum/archive:0.4.1 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.4.1 |
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docker pull rlum/archive:0.4.2 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.4.2 |
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docker pull rlum/archive:0.4.3 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.4.3 |
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docker pull rlum/archive:0.4.4 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.4.4 |
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docker pull rlum/archive:0.4.5 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.4.5 |
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docker pull rlum/archive:0.4.6 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.4.6 |
Version 0.5.x
| Version | Size | Pull image | Run image |
|---|---|---|---|
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docker pull rlum/archive:0.5.0 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.5.0 |
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docker pull rlum/archive:0.5.1 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.5.1 |
Version 0.6.x
| Version | Size | Pull image | Run image |
|---|---|---|---|
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docker pull rlum/archive:0.6.0 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.6.0 |
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docker pull rlum/archive:0.6.1 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.6.1 |
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docker pull rlum/archive:0.6.2 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.6.2 |
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docker pull rlum/archive:0.6.4 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.6.4 |
Version 0.7.x
| Version | Size | Pull image | Run image |
|---|---|---|---|
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docker pull rlum/archive:0.7.0 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.7.0 |
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docker pull rlum/archive:0.7.3 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.7.3 |
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docker pull rlum/archive:0.7.4 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.7.4 |
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docker pull rlum/archive:0.7.5 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.7.5 |
Version 0.8.x
| Version | Size | Pull image | Run image |
|---|---|---|---|
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docker pull rlum/archive:0.8.2 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.8.2 |
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docker pull rlum/archive:0.8.3 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.8.3 |
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docker pull rlum/archive:0.8.4 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.8.4 |
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docker pull rlum/archive:0.8.5 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.8.5 |
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docker pull rlum/archive:0.8.6 |
docker run -d -p 8787:8787 -e PASSWORD=yourpassword rlum/archive:0.8.6 |