Merge remote-tracking branch 'R-miss-tastic/master'

config.toml

@@ -1,12 +1,13 @@
 # Hugo variables
 #
-baseurl = "/"
+baseurl = "https://rmisstastic.netlify.com/"
 languageCode = "en-us"
 title = "R-miss-tastic"
 theme = "hugo-theme-bootstrap4-blog"
+tags = ["missing values", "missing data", "imputation", "R", "incomplete data", "rmisstastic", "rmiss"]
 ignoreFiles = ["\\.Rmd$", "\\.Rmarkdown$", "_files$", "_cache$"]
 # number of posts to show on home/category/tag pages (Default: 10)
-paginate = 1
+paginate = 3
 # optionally override the site's footer with custom copyright text
 # copyright = "Except where otherwise noted, content on this site is licensed under a [Creative Commons Attribution 4.0 International license](https://creativecommons.org/licenses/by-sa/4.0/)."
 #googleAnalytics = "UA-123-45"
@@ -19,54 +20,11 @@ paginate = 1
 [[menu.sidebar]]
   name = "GitHub"
   url = "https://github.com/R-miss-tastic"
-
-[[menu.navbar]]
-    identifier = "Bibliography"
-    name = "Bibliography"
-    url = "/bibliography/"
-    weight = 2
-
-[[menu.navbar]]
-    parent = "Bibliography"
-    name = "Bibliography by topics"
-    url = "/bibliography/biblio_topics/"
-
-[[menu.navbar]]
-    parent = "Bibliography"
-    name = "Bibliography (complete)"
-    url = "/bibliography/biblio_complete/"
-
-[[menu.navbar]]
-    name = "Tutorials"
-    url = "/tutorials/"
-    weight = 3
 
-[[menu.navbar]]
-    name = "R packages"
-    url = "/rpkg/"
-    weight = 4
-
-[[menu.navbar]]
-    name = "Data"
-    url = "/data/"
-    weight = 5
-
-[[menu.navbar]]
-    name = "People"
-    url = "/people/"
-    weight = 6
-
-[[menu.navbar]]
-    name = "Events & links"
-    url = "/events/"
-    weight = 7
-
-[[menu.navbar]]
-    name = "Contact"
-    url = "/contact/"
-    weight = 100
-
 
+[[menu.sidebar]]
+  name = "Events"
+  url = "/posts/events/"     
 
 # Theme variables
 #
@@ -75,7 +33,7 @@ paginate = 1
   author = "R miss tastic team <r-miss-tastic[AT]clementine.wf>"
 
   # Description/subtitle for homepage (can be Markdown)
-  description = "A resource website on missing data"
+  description = "A resource website on missing values - Methods and references for managing missing data"
 
   # Format dates with Go's time formatting
   date_format = "Mon Jan 02, 2006"
@@ -108,10 +66,10 @@ paginate = 1
 
   [params.sidebar]
     # Optional about block for sidebar (can be Markdown)
-    about = "This website is proudly sponsored by R Consortium and maintained by Julie Josse, Nicholas Tierney and Nathalie Vialaneix."
+     about = "This website is proudly sponsored by R Consortium and maintained by [Julie Josse](http://juliejosse.com), [Imke Mayer](https://www.imkemayer.com), [Nicholas Tierney](https://www.njtierney.com) and [Nathalie Vialaneix](http://www.nathalievialaneix.eu).<br><br>[Read more →](/posts/intro/)"
 
     # How many posts to show on the sidebar (Default: 5)
-    #num_recent_posts = 2
+    # num_recent_posts = 3
 
   [params.social]
     # Optional, used for attribution in Twitter cards (ideally not a person

content/biblio_complete.Rmd

@@ -2,13 +2,13 @@
 output: md_document
 author: "Imke Mayer"
 date: 2018-10-24
-title: Complete list of selected references
-weight: 2
 url: "/bibliography/biblio_complete/"
+parent: "Bibliography"
+name: "Bibliography (complete)"
 ---
 
 
-```{r, load_refs, echo=FALSE, message=FALSE}
+```{r, load_refs, echo=FALSE, message=FALSE, warning=FALSE}
   require(dplyr)
   require(RefManageR)
   bibfile <- "../resources/rmisstastic_biblio.bib"
@@ -163,7 +163,7 @@ url: "/bibliography/biblio_complete/"
 ```
 
 <br>
-<p align="justify"><i>A commented and structured version of this bibliography can be found [here](../biblio_topics/).</i></p>
+<a href="/bibliography/"><b>A commented version of this bibliography can be found here.</b></a>
 
 <div class="container">
 <div class="row">

content/biblio_topics.Rmd → content/bibliography.Rmd

@@ -2,17 +2,21 @@
 output: md_document
 author: "Imke Mayer"
 date: 2018-10-24
-title: Bibliography by topics
+linktitle: Bibliography
 weight: 2
-url: "/bibliography/biblio_topics/"
+menu: navbar
+name: Bibliography
+identifier: "Bibliography"
+url: /bibliography/
 ---
 
+<p align="justify">On this platform we attempt to give you an overview of main references on missing values. We do not claim to gather all available references on the subject but rather to offer a peak into different fields of active research on handling missing values, allowing for an introductory reading as well as a starting point for further bibliographical research.</p>
 
-<br>
-<p align="justify"> Inspired by [CRAN Task View on Missing Data](https://cran.r-project.org/web/views/MissingData.html){target="_blank"} and a [review](http://journal-sfds.fr/article/view/681){target="_blank"} of Imbert & Villa-Vialaneix on handling missing values (2018, written in French) we organized our selection of relevant references on missing values by different topics.
+<a href="/bibliography/biblio_complete/"><b>See here for a full (and uncommented) list of references.</b></a>
+
+<p align="justify"> Inspired by <a href="https://cran.r-project.org/web/views/MissingData.html" target="_blank"><b>CRAN Task View on Missing Data</b></a> and a [review](http://journal-sfds.fr/article/view/681){target="_blank"} of Imbert & Villa-Vialaneix on handling missing values (2018, written in French) we organized our selection of relevant references on missing values by different topics.
 </p>
 
-*The full list of references can be found [here](../biblio_complete/).*
 
 
 <div class="container">
@@ -40,7 +44,7 @@ url: "/bibliography/biblio_topics/"
 </div>
 </div>
 <!-- --------------------------------------------------------------------------------------------------------------------------- -->
-```{r, load_refs, echo=FALSE, message=FALSE}
+```{r, load_refs, echo=FALSE, message=FALSE, warning = FALSE}
   require(dplyr)
   require(RefManageR)
   bibfile <- "../resources/rmisstastic_biblio.bib"
@@ -262,7 +266,7 @@ create_ref_buttons(selected_refs, c(0,3,4), "weight_misc")
 ```
 </br>
 <!-- --------------------------------------------------------------------------------------------------------------------------- -->
-<font size="+1"><b>For causal inference</b></font>
+<font size="+1"><b>Methods in common with causal inference</b></font>
 <!-- --------------------------------------------------------------------------------------------------------------------------- -->
 <p align="justify">Inverse probability weighting is also considered in causal inference: A bias is induced by the presence of confounders, i.e. variables which interact with both covariates and outcome. Hence, if the goal is to estimate causal relationships between covariates and outcome it is necessary to account for the potential effect of confounders -- a selection bias -- on the result of causal inference. 
 </p>