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A package that provides data analysis pipeline for flow cytometry.
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README.md

openCyto

An R package that providing an automated data analysis pipeline for flow cytometry.

Documentation Resources

The github-pages site documentation is a bit outdated.

The package vignettes are the current best resource to get started with the openCyto.

The add_pop() API is a good interactive approach to building up a template, population by population. It takes arguments found in the csv template, performs the gating of a GatingSet or GatingHierarchy and returns a line of text that can be added to a csv template.

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