• Shell Updated Sep 10, 2018
  • Microbial Signatures in Human RNAseq Data

    Python 1 MIT Updated Sep 4, 2018
  • MAGE - Multilevel Analysis of Gene Expression

    R MIT Updated Jan 6, 2018
  • Code to implement the smooth Euler characteristic transform (SECT)

    R 2 GPL-3.0 Updated Sep 25, 2017
  • scTDA

    Forked from CamaraLab/scTDA

    An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data

    Python 3 17 GPL-3.0 Updated Aug 10, 2017
  • The Medical Imaging Interaction Toolkit with augmented tools for segmentation (MITKats), an extension of MITK with Threshold Components and Clipping Segmentation features.

    C++ Updated May 18, 2017
  • NORI (Non-coding RNA Identification), a computational tool to identify lncRNAs using next generation sequencing.

    Updated Mar 15, 2017
  • Implementation of Mapper Algorithm

    Python 1 8 MIT Updated Nov 18, 2016
  • Evolutionary Moduli space visualization and statistics

    Python 1 GPL-3.0 Updated Oct 27, 2016
  • TOBI predicts somatic variants from .vcf or .bam input

    R 4 1 Updated Oct 3, 2016
  • A wrapper for annotation via blast

    Python Updated Jul 7, 2016
  • Topological inference of horizontal evolution from multiple sequence alignments

    C++ 1 4 GPL-3.0 Updated Apr 22, 2016
  • Annotation and Prediction of Oncogenic Gene Fusions in RNAseq

    Java 7 3 MIT Updated Feb 20, 2016
  • Persistent Homology Datasets

    4 2 Updated Nov 3, 2015
  • Code for "Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes". View more information in the ipython notebook

    Python 1 4 Updated May 26, 2015
  • Tumor Only Boosting Identification of driver mutations.

    R 3 Updated Jan 9, 2015