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Add input file for dbpr example
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Paul Cochrane committed Apr 28, 2015
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ID SSB_THET8 Reviewed; 263 AA.
AC Q5SLP9; Q70M05;
DT 29-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT 21-DEC-2004, sequence version 1.
DT 04-FEB-2015, entry version 72.
DE RecName: Full=Single-stranded DNA-binding protein {ECO:0000255|HAMAP-Rule:MF_00984};
DE Short=SSB {ECO:0000255|HAMAP-Rule:MF_00984};
GN Name=ssb; OrderedLocusNames=TTHA0244;
OS Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579).
OC Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae;
OC Thermus.
OX NCBI_TaxID=300852;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND SUBUNIT.
RX PubMed=12368464;
RA Dabrowski S., Olszewski M., Piatek R., Brillowska-Dabrowska A.,
RA Konopa G., Kur J.;
RT "Identification and characterization of single-stranded-DNA-binding
RT proteins from Thermus thermophilus and Thermus aquaticus -- new
RT arrangement of binding domains.";
RL Microbiology 148:3307-3315(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Perales C., Cava F., Berenguer J.;
RT "One step beyond PCR and RT-PCR: the SSB protein from Thermus
RT thermophilus.";
RL Submitted (APR-2003) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=HB8 / ATCC 27634 / DSM 579;
RA Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y.,
RA Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.;
RT "Complete genome sequence of Thermus thermophilus HB8.";
RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Plays an important role in DNA replication,
CC recombination and repair. Binds to ssDNA and to an array of
CC partner proteins to recruit them to their sites of action during
CC DNA metabolism. {ECO:0000255|HAMAP-Rule:MF_00984}.
CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:12368464}.
CC -!- SIMILARITY: Contains 2 SSB domains. {ECO:0000255|HAMAP-
CC Rule:MF_00984}.
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DR EMBL; AF079160; AAC28386.2; -; Genomic_DNA.
DR EMBL; AJ564626; CAD92097.1; -; Genomic_DNA.
DR EMBL; AP008226; BAD70067.1; -; Genomic_DNA.
DR RefSeq; WP_011227803.1; NC_006461.1.
DR RefSeq; YP_143510.1; NC_006461.1.
DR PDB; 2CWA; X-ray; 1.96 A; A=1-263.
DR PDBsum; 2CWA; -.
DR ProteinModelPortal; Q5SLP9; -.
DR SMR; Q5SLP9; 1-259.
DR STRING; 300852.TTHA0244; -.
DR EnsemblBacteria; BAD70067; BAD70067; BAD70067.
DR GeneID; 3167973; -.
DR KEGG; ttj:TTHA0244; -.
DR PATRIC; 23955433; VBITheThe93045_0244.
DR eggNOG; COG0629; -.
DR HOGENOM; HOG000023350; -.
DR KO; K03111; -.
DR OMA; WRDLAEW; -.
DR OrthoDB; EOG6M9F32; -.
DR BioCyc; TTHE300852:GH8R-253-MONOMER; -.
DR EvolutionaryTrace; Q5SLP9; -.
DR Proteomes; UP000000532; Chromosome.
DR GO; GO:0003697; F:single-stranded DNA binding; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR Gene3D; 2.40.50.140; -; 2.
DR HAMAP; MF_00984; SSB; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR000424; Primosome_PriB/ssb.
DR InterPro; IPR011344; ssDNA-bd.
DR PANTHER; PTHR10302; PTHR10302; 1.
DR Pfam; PF00436; SSB; 2.
DR SUPFAM; SSF50249; SSF50249; 2.
DR TIGRFAMs; TIGR00621; ssb; 2.
DR PROSITE; PS50935; SSB; 2.
PE 1: Evidence at protein level;
KW 3D-structure; Complete proteome; DNA damage; DNA recombination;
KW DNA repair; DNA replication; DNA-binding; Reference proteome; Repeat.
FT CHAIN 1 263 Single-stranded DNA-binding protein.
FT /FTId=PRO_0000096150.
FT DOMAIN 5 108 SSB 1. {ECO:0000255|HAMAP-Rule:MF_00984}.
FT DOMAIN 128 227 SSB 2. {ECO:0000255|HAMAP-Rule:MF_00984}.
FT MOTIF 258 263 Important for interaction with partner
FT proteins. {ECO:0000255|HAMAP-
FT Rule:MF_00984}.
FT CONFLICT 93 93 R -> K (in Ref. 2; CAD92097).
FT {ECO:0000305}.
FT CONFLICT 241 241 V -> A (in Ref. 2; CAD92097).
FT {ECO:0000305}.
FT CONFLICT 260 260 E -> D (in Ref. 1 and 2). {ECO:0000305}.
FT STRAND 5 16 {ECO:0000244|PDB:2CWA}.
FT STRAND 19 22 {ECO:0000244|PDB:2CWA}.
FT STRAND 28 39 {ECO:0000244|PDB:2CWA}.
FT STRAND 49 59 {ECO:0000244|PDB:2CWA}.
FT HELIX 60 64 {ECO:0000244|PDB:2CWA}.
FT TURN 65 69 {ECO:0000244|PDB:2CWA}.
FT STRAND 75 85 {ECO:0000244|PDB:2CWA}.
FT STRAND 96 107 {ECO:0000244|PDB:2CWA}.
FT STRAND 114 116 {ECO:0000244|PDB:2CWA}.
FT STRAND 122 125 {ECO:0000244|PDB:2CWA}.
FT STRAND 128 139 {ECO:0000244|PDB:2CWA}.
FT STRAND 142 145 {ECO:0000244|PDB:2CWA}.
FT STRAND 151 161 {ECO:0000244|PDB:2CWA}.
FT STRAND 169 178 {ECO:0000244|PDB:2CWA}.
FT HELIX 179 185 {ECO:0000244|PDB:2CWA}.
FT STRAND 193 206 {ECO:0000244|PDB:2CWA}.
FT STRAND 208 210 {ECO:0000244|PDB:2CWA}.
FT STRAND 212 224 {ECO:0000244|PDB:2CWA}.
SQ SEQUENCE 263 AA; 29882 MW; 7BD2BC31AE3B9214 CRC64;
MARGLNRVFL IGALATRPDM RYTPAGLAIL DLTLAGQDLL LSDNGGEREV SWYHRVRLLG
RQAEMWGDLL DQGQLVFVEG RLEYRQWERE GERRSELQIR ADFLDPLDDR GKERAEDSRG
QPRLRAALNQ VFLMGNLTRD PELRYTPQGT AVARLGLAVN ERRQGAEERT HFVEVQAWRD
LAEWAAELRK GDGLFVIGRL VNDSWTSSSG ERRFQTRVEA LRLERPTRGP AQAGGSRSRE
VQTGGVDIDE GLEDFPPEEE LPF
//

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